View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_low_12 (Length: 242)
Name: NF12571_low_12
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55011423 - 55011647
Alignment:
| Q |
1 |
ggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggtgataacatcaagtttgggtttccgat |
100 |
Q |
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| T |
55011423 |
ggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggtgataacatcaagtttgggtttccgat |
55011522 |
T |
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| Q |
101 |
ggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgctttggtcgcaattcgttggagt |
200 |
Q |
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| T |
55011523 |
ggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgctttggtcgcaattcgttggagt |
55011622 |
T |
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| Q |
201 |
actgattatttgcttaagactgttt |
225 |
Q |
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| T |
55011623 |
actgattatttgcttaagactgttt |
55011647 |
T |
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Back To:
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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 44151980 - 44152068
Alignment:
| Q |
57 |
ggttactacgacgccggtgataacatcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttgg |
145 |
Q |
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| T |
44151980 |
ggttactacgacgccggcgacaacataaagttcgggtttccgatggcgtttacaacgacgatgttagcttggagtgtgattgattttgg |
44152068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 39419599 - 39419534
Alignment:
| Q |
82 |
tcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtg |
147 |
Q |
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| T |
39419599 |
tcaagtttggttttcctatggcttttactaccactatgctttcatggagtgttattgagtttggtg |
39419534 |
T |
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