View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_low_4 (Length: 464)
Name: NF12571_low_4
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 51 - 446
Target Start/End: Original strand, 17538380 - 17538766
Alignment:
| Q |
51 |
tcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatc |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17538380 |
tcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatc |
17538479 |
T |
|
| Q |
151 |
ccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaa |
250 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17538480 |
ccatcgaagaacgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtattggtgaagacgtaactttttgccgaaggccaa |
17538579 |
T |
|
| Q |
251 |
tacttgaaaactacagaatgaggagatttagtgtcaatgtcccagacttgaacttggattcctccttttccgaaagcagctgcagtaccatccaacaaaa |
350 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17538580 |
tacttgaaaactacagaatgaggagatttggtgtcaatgtcccagacttgaacttggactcctccttttccgaaagc---------accatccaacaaaa |
17538670 |
T |
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| Q |
351 |
ccggaacaacaaatttctcagccaaatccttattcaacaaaagcctagtcttatgcttacagatatcactcgtctcaagcaccttcttgatctccc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17538671 |
ccggaacaacaaatttctcagccaaatccttattcaacaaaagccttgtcttatgcttacagatatcactcgtctcaagcaccttcttgatctccc |
17538766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 98 - 446
Target Start/End: Complemental strand, 17694076 - 17693728
Alignment:
| Q |
98 |
ataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17694076 |
ataaactaaggctttttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagagcgatttgatcgtctttcttgagttcccttctgttaa |
17693977 |
T |
|
| Q |
198 |
caaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtcccagac |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17693976 |
caaactctttggtccaagttttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttggtgtcaatgtcccagac |
17693877 |
T |
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| Q |
298 |
ttgaacttggattcctccttttccgaaagcagctgcagtaccatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagccta |
397 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693876 |
ttgaacttggactcctccttttccgaaatcagctgcagcaccatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagcctt |
17693777 |
T |
|
| Q |
398 |
gtcttatgcttacagatatcactcgtctcaagcaccttcttgatctccc |
446 |
Q |
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| T |
17693776 |
gtcttatgcttacagatatcactcgtctcaagcaccttcttgatctccc |
17693728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 113 - 446
Target Start/End: Complemental strand, 17619914 - 17619584
Alignment:
| Q |
113 |
ttaagaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtcc |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
17619914 |
ttaagaacggagaaatcaaatcgttggttgttttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtcc |
17619815 |
T |
|
| Q |
213 |
aagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtcccagacttgaacttggattcc |
312 |
Q |
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||||||||||||||||||| |||||||||| ||| |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | |
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| T |
17619814 |
aagtcttggtgaagacgtacatttttgccgagtgccgatacatgaaaactatagaaagaggagatttggtgtcaatgtcccagacttgaacttgga---c |
17619718 |
T |
|
| Q |
313 |
tccttttccgaaagcagctgcagtaccatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagcctagtcttatgcttacag |
412 |
Q |
| |
|
||||| | || ||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||| || ||| |||| |
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| T |
17619717 |
tccttcttggagagcagctgcagcaccatccaacaagaccggaatgacaaatttctcagcccaatccttatccaacaaaagcctactcaaatggctacaa |
17619618 |
T |
|
| Q |
413 |
atatcactcgtctcaagcaccttcttgatctccc |
446 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
17619617 |
gtatcactcgtctcaagcaccttcttgatatccc |
17619584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17694199 - 17694102
Alignment:
| Q |
1 |
aattcaaatcaaagaagcatcatcaatttccccaataccaattacatccttcaatgaatggaaaaacagtagggttatgcaacaaaaattaaaacaaa |
98 |
Q |
| |
|
|||| |||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
17694199 |
aattgaaataaaagaagcattatcaatctccccaataacaattacatccttcaatgaatggaaaaacagtaggattaagcaagaaaaattaaaacaaa |
17694102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 17184759 - 17184871
Alignment:
| Q |
116 |
agaacggagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaag |
215 |
Q |
| |
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|||||||||||||||||||| | |||| | ||||||| ||||| |||||||||||| |||| || | || |||||| ||||||||||||| | |||||| |
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| T |
17184759 |
agaacggagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatccaag |
17184858 |
T |
|
| Q |
216 |
tcttggtgaagac |
228 |
Q |
| |
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|||| |||||||| |
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| T |
17184859 |
tcttcgtgaagac |
17184871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 17195681 - 17195575
Alignment:
| Q |
122 |
gagaaatcaaatcgttggttgtttcgatcccatcgaagaccgatttgatcgtctttcttgagttcccttctgttaacaaactctttggtccaagtcttgg |
221 |
Q |
| |
|
|||||||||||||| | |||| | ||||||| ||||| ||||||||||| |||| || | || |||||| |||| |||||||| | |||||||||| | |
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| T |
17195681 |
gagaaatcaaatcggttgttgagttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcg |
17195582 |
T |
|
| Q |
222 |
tgaagac |
228 |
Q |
| |
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||||||| |
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| T |
17195581 |
tgaagac |
17195575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 17809143 - 17809049
Alignment:
| Q |
199 |
aaactctttggtccaagtcttggtgaagacgtaactttttgccgaaggccaatacttgaaaactacagaatgaggagatttagtgtcaatgtccc |
293 |
Q |
| |
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|||||||||| |||| | |||||||| ||||| || | ||| |||| ||| ||||||||||| |||||| | |||||||||||||||||||| |
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| T |
17809143 |
aaactctttgatccattttttggtgaaaacgtagctatgtgctgaagtccatatcttgaaaactagagaatgggaagatttagtgtcaatgtccc |
17809049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 17185004 - 17185040
Alignment:
| Q |
361 |
aaatttctcagccaaatccttattcaacaaaagccta |
397 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| |
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| T |
17185004 |
aaatttatcagccaaatccttattcaacataagccta |
17185040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 17195442 - 17195406
Alignment:
| Q |
361 |
aaatttctcagccaaatccttattcaacaaaagccta |
397 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| |
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| T |
17195442 |
aaatttatcagccaaatccttattcaacataagccta |
17195406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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