View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12571_low_6 (Length: 390)
Name: NF12571_low_6
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_6 |
 | |
|
| [»] scaffold0176 (4 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 38726587 - 38726954
Alignment:
| Q |
18 |
ataattgtccatggatctattctttgtgaatcattaaggccacggaatcctgcttcgaagcctttatttttcacaagttctgcccataatcccccagctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38726587 |
ataattgtccatggatctattctttgtgaatcattaaggccacggaatcctgcttcgaaacctttatttttcacaagttctgcccataatcccccagctc |
38726686 |
T |
|
| Q |
118 |
cagcatggttaatctcctcataaaatactccaaacaatgtgtctggaatatgccttccagtagaacctgcatctataactagttttggtattatctggc- |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38726687 |
cagcatggttaatctcctcataaaatactccaaacaatgtgtctggaatatgccttccagtagaacctgcatctataactagttttggtattatctggct |
38726786 |
T |
|
| Q |
217 |
-----taccattagcattagcatggcattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagcacgaaaggaacaagagagatacatagttttc |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
38726787 |
accattaccattagcatcagcatggcattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagcacgaaaggaacatgagaaatacatagttttc |
38726886 |
T |
|
| Q |
312 |
aaggatgtatacaatttctggtggatttggcttaaatgtaatgtgtaagatttcagtttttaattctt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38726887 |
aaggatgtatacaatttctggtggatttggcttaaatgtaatgtgtaagatttcagtttttaattctt |
38726954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 28474 - 28326
Alignment:
| Q |
133 |
cctcataaaatactccaaacaatgtgtctggaatatgccttccagtagaacctgcatctataactagttttggtat-tatctggc--taccattagcatt |
229 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |||||| |||| | |||||| || |||| ||||| ||| | || || || ||||| ||| |
|
|
| T |
28474 |
cctcaaaaaatgctccaaagaatgtgtctggaataggccttctagta---cgtgcatcaatcactaattttgatatatggctagcattaacattaacatc |
28378 |
T |
|
| Q |
230 |
agcatggcattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagca |
281 |
Q |
| |
|
||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28377 |
agcgtggcattcagaaatgaccaaacacacaatcaaagagaaaagaaaagca |
28326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 34975 - 34827
Alignment:
| Q |
133 |
cctcataaaatactccaaacaatgtgtctggaatatgccttccagtagaacctgcatctataactagttttggtattatctggctaccattagcattagc |
232 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |||||| |||| | |||||| || |||| ||||| ||| |||||| ||||||||||| | |
|
|
| T |
34975 |
cctcaaaaaatgctccaaagaatgtgtctggaataggccttctagta---cgtgcatcaatcactaattttgatata---tggctagcattagcattaac |
34882 |
T |
|
| Q |
233 |
at------ggcattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagca |
281 |
Q |
| |
|
|| | |||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34881 |
atcagcgtgacattcagaaatgaccaaacacacaatcaaagagaaaagaaaagca |
34827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 28628 - 28582
Alignment:
| Q |
89 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
28628 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
28582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 35129 - 35083
Alignment:
| Q |
89 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
35129 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
35083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 34168152 - 34168004
Alignment:
| Q |
133 |
cctcataaaatactccaaacaatgtgtctggaatatgccttccagtagaacctgcatctataactagttttggtattatctggctaccattagcattagc |
232 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |||||| |||| | |||||| || |||| ||||| ||| |||||| ||||||||||| | |
|
|
| T |
34168152 |
cctcaaaaaatgctccaaagaatgtgtctggaataggccttctagta---cgtgcatcaatcactaattttgatata---tggctagcattagcattaac |
34168059 |
T |
|
| Q |
233 |
at------ggcattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagca |
281 |
Q |
| |
|
|| | |||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34168058 |
atcagcgtgacattcagaaatgaccaaacacacaatcaaagagaaaagaaaagca |
34168004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 34205758 - 34205714
Alignment:
| Q |
237 |
cattcaaaaatgaccaaacaaacaatcaaagagaaaataaaagca |
281 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34205758 |
cattcagaaatgaccaaacacacaatcaaagagaaaagaaaagca |
34205714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 34155599 - 34155645
Alignment:
| Q |
89 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
34155599 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
34155645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 34168306 - 34168260
Alignment:
| Q |
89 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
34168306 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
34168260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 34208515 - 34208469
Alignment:
| Q |
89 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
34208515 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
34208469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 34446559 - 34446511
Alignment:
| Q |
87 |
ttcacaagttctgcccataatcccccagctccagcatggttaatctcct |
135 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| || ||||||| |
|
|
| T |
34446559 |
ttcacaagttcagaccataatccaccagctccagcatgattgatctcct |
34446511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University