View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12571_low_7 (Length: 349)

Name: NF12571_low_7
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12571_low_7
NF12571_low_7
[»] chr7 (2 HSPs)
chr7 (1-334)||(41875668-41876001)
chr7 (83-145)||(5269468-5269530)
[»] chr8 (4 HSPs)
chr8 (80-138)||(31705029-31705089)
chr8 (80-138)||(1470922-1470981)
chr8 (236-307)||(40868457-40868528)
chr8 (96-145)||(41620374-41620423)
[»] chr3 (1 HSPs)
chr3 (82-150)||(32069084-32069151)
[»] chr2 (2 HSPs)
chr2 (94-138)||(3423849-3423893)
chr2 (81-120)||(6993791-6993831)
[»] chr1 (4 HSPs)
chr1 (96-148)||(36641810-36641862)
chr1 (156-210)||(24817795-24817849)
chr1 (250-307)||(24817944-24818001)
chr1 (94-134)||(45234146-45234186)
[»] chr6 (1 HSPs)
chr6 (80-138)||(27857320-27857378)
[»] chr5 (1 HSPs)
chr5 (80-132)||(35960365-35960417)
[»] chr4 (1 HSPs)
chr4 (98-138)||(1404367-1404407)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 41876001 - 41875668
Alignment:
Q  1 atgttgttgtagatcttattattatagttcaaaaaatcaattcaacactgaaaaatgattataacagataaaaattaggttatagcttatattaaataat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41876001 atgttgttgtagatcttattattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttatattaaataat 41875902  T
Q  101 ttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaattgtttatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41875901 ttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaagttgtttatc 41875802  T
Q  201 taaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccgg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41875801 taaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccgg 41875702  T
Q  301 tttcttgtcgcaatatattcgcaacttcatctct 334  Q
    |||||||||| ||||||| |||||||||||||||    
T  41875701 tttcttgtcgtaatatatacgcaacttcatctct 41875668  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 5269530 - 5269468
Alignment:
Q  83 tagcttatattaaataatttgaccttattttatcttttagtacagaaataacttatttataag 145  Q
    |||||||| | |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269530 tagcttatctgaaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 31705089 - 31705029
Alignment:
Q  80 ttatagcttatattaaa--taatttgaccttattttatcttttagtacagaaataacttat 138  Q
    ||||||||||||| |||  ||||||||| | |||||||||||||||||||||||| |||||    
T  31705089 ttatagcttatatgaaacgtaatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 1470922 - 1470981
Alignment:
Q  80 ttatagcttatattaaa-taatttgaccttattttatcttttagtacagaaataacttat 138  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| || ||||||| |||||    
T  1470922 ttatagcttatatgaaagtaatttgactttattttatcttttattatagaaatagcttat 1470981  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 40868457 - 40868528
Alignment:
Q  236 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 307  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | || |||| |||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttg 40868528  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  96 ataatttgaccttattttatcttttagtacagaaataacttatttataag 145  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 32069151 - 32069084
Alignment:
Q  82 atagcttatattaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 150  Q
    ||||||| ||| |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069151 atagcttttatgaaattatttgactttattttatctttt-ttatagaaataacttatttataattaagt 32069084  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  94 aaataatttgaccttattttatcttttagtacagaaataacttat 138  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 6993791 - 6993831
Alignment:
Q  81 tatagcttatattaa-ataatttgaccttattttatctttt 120  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  6993791 tatagcttatatgaatataatttgaccttattttatctttt 6993831  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  96 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 148  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  156 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 210  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 24817944 - 24818001
Alignment:
Q  250 tctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 307  Q
    ||||||||| ||||||||||||||| ||||||||| || | |||||||  ||||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttg 24818001  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  94 aaataatttgaccttattttatcttttagtacagaaataac 134  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 27857378 - 27857320
Alignment:
Q  80 ttatagcttatattaaataatttgaccttattttatcttttagtacagaaataacttat 138  Q
    ||||||||||||||||| | |||||| ||||||||||||||  |||| || ||||||||    
T  27857378 ttatagcttatattaaacagtttgactttattttatcttttgttacaaaagtaacttat 27857320  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 35960417 - 35960365
Alignment:
Q  80 ttatagcttatattaaataatttgaccttattttatcttttagtacagaaata 132  Q
    |||||| |||||| ||||| |||||| ||||||||||||||| || |||||||    
T  35960417 ttatagtttatatgaaatagtttgactttattttatcttttattatagaaata 35960365  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  98 aatttgaccttattttatcttttagtacagaaataacttat 138  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

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