View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_low_8 (Length: 302)
Name: NF12571_low_8
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 3710014 - 3709945
Alignment:
| Q |
79 |
tcacaatcaaacccaaacccaaatcaccctctttttgtttttcaacaactacattatcaatttcaggaat |
148 |
Q |
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| T |
3710014 |
tcacaatcaaacccaaacccacatcaccctctttttgtttttcaacaactacattatcaatttcaggaat |
3709945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 3709874 - 3709811
Alignment:
| Q |
222 |
ctcagattccgataagcaacacaaacacatttcctattcttctctttacaattacaattcaaaa |
285 |
Q |
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| T |
3709874 |
ctcagattccgataagctacacaaacacatttcctattcttctctttacaattacaattcaaaa |
3709811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 37283326 - 37283282
Alignment:
| Q |
104 |
accctctttttgtttttcaacaactacattatcaatttcaggaat |
148 |
Q |
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| T |
37283326 |
accctcttcttgtttttcaacaactacactatcaatttcaggaat |
37283282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5326950 - 5326994
Alignment:
| Q |
104 |
accctctttttgtttttcaacaactacattatcaatttcaggaat |
148 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
5326950 |
accctcttcttgtttttcaacaactacactatcaatttcaggaat |
5326994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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