View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12572_low_1 (Length: 249)

Name: NF12572_low_1
Description: NF12572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12572_low_1
NF12572_low_1
[»] chr6 (1 HSPs)
chr6 (106-230)||(34851531-34851655)
[»] chr5 (1 HSPs)
chr5 (122-197)||(17247705-17247780)
[»] chr8 (2 HSPs)
chr8 (116-192)||(11491293-11491369)
chr8 (149-189)||(5574343-5574383)
[»] chr4 (1 HSPs)
chr4 (122-223)||(8457753-8457856)
[»] chr1 (3 HSPs)
chr1 (160-214)||(5617693-5617746)
chr1 (122-192)||(40781410-40781480)
chr1 (143-212)||(31433571-31433640)
[»] chr3 (2 HSPs)
chr3 (166-227)||(36505590-36505651)
chr3 (142-202)||(48612891-48612951)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 34851531 - 34851655
Alignment:
Q  106 gaaacaactatctctgatactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctc 205  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||| ||||    
T  34851531 gaaacaactatctctgatactctcgttatgttcttactctctttattattttagtttttgtgttaatatatacatttctttgtaaatctttggttgtctc 34851630  T
Q  206 ataagttgttttaaaaatggttctt 230  Q
    |||||||||||||||||||||||||    
T  34851631 ataagttgttttaaaaatggttctt 34851655  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 17247780 - 17247705
Alignment:
Q  122 atactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttg 197  Q
    ||||||||||| | |||||||||||| ||||| |||||||||||||| |||   ||||||| ||||||||||||||    
T  17247780 atactctcattgtattcttactctctctattactttaatttttgtgtcaatatctacatttatttgtatatctttg 17247705  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 11491369 - 11491293
Alignment:
Q  116 tctctgatactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatat 192  Q
    ||||| ||||| ||||| | ||| || |||||||||||||||||||||| | ||||| | || ||||||||||||||    
T  11491369 tctctcatactttcattgtattcgtagtctctttattattttaatttttatattaatacctaaatttctttgtatat 11491293  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 5574343 - 5574383
Alignment:
Q  149 tattattttaatttttgtgttaatgcatacatttctttgta 189  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  5574343 tattattttgatttttgtgttaatacatacttttctttgta 5574383  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 8457753 - 8457856
Alignment:
Q  122 atactctcattatgttcttactctcttt--attattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaa 219  Q
    |||||| |||| |||||||||||||| |  |||  | || |||| ||| |||||| |||||||||||||||| |||||||| || |||||||||| | ||    
T  8457753 atactcacattgtgttcttactctctctctattgctctagttttcgtgctaatgcctacatttctttgtatacctttggttgtcccataagttgtctcaa 8457852  T
Q  220 aaat 223  Q
    ||||    
T  8457853 aaat 8457856  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 5617746 - 5617693
Alignment:
Q  160 tttttgtgttaatgcatacatttctttgtatatctttggttatctcataagttgt 214  Q
    ||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||||    
T  5617746 tttttgtgttaatacatacatttctttgtatat-tttggttgtcacataaattgt 5617693  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 40781410 - 40781480
Alignment:
Q  122 atactctcattatgttcttactctctttattattttaatttttgtgttaatgcatacatttctttgtatat 192  Q
    |||||| |||| |||| |||||||| || ||||||| ||||||||||||||   || ||||||||||||||    
T  40781410 atactcacattgtgtttttactctcgttgttattttgatttttgtgttaatatttatatttctttgtatat 40781480  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 31433571 - 31433640
Alignment:
Q  143 tctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttatctcataagtt 212  Q
    ||||| |||||||||| |||| |||| ||| | |||||| ||||||| |||| ||||| |||||||||||    
T  31433571 tctctctattattttagttttcgtgtcaatacctacattactttgtaaatctatggttgtctcataagtt 31433640  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 36505651 - 36505590
Alignment:
Q  166 tgttaatgcatacatttctttgtatatctttggttatctcataagttgttttaaaaatggtt 227  Q
    ||||||| | ||||||||||||| || |||| ||| |  |||||||||||||||||||||||    
T  36505651 tgttaatacctacatttctttgtctaactttagttgttccataagttgttttaaaaatggtt 36505590  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 48612891 - 48612951
Alignment:
Q  142 ctctctttattattttaatttttgtgttaatgcatacatttctttgtatatctttggttat 202  Q
    ||||||||||| ||||  |||| |||||||||  ||  |||||||||||||||||||||||    
T  48612891 ctctctttattgttttggttttcgtgttaatgtctatttttctttgtatatctttggttat 48612951  T

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