View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12572_low_3 (Length: 223)
Name: NF12572_low_3
Description: NF12572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12572_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2111929 - 2112107
Alignment:
| Q |
1 |
atacattctacctaaagatgaagtaatgcagtatgcttgtgatgcaagtatagaaatgcaactattttaatgaagttttgaggattctaaattgcaaatc |
100 |
Q |
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| T |
2111929 |
atacattctacctaaagatgaagtaatgcagtatgcttgtgatgcaagtatagaaatgcaactattttaatgaagttttgaggattctaaattgcaaatc |
2112028 |
T |
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| Q |
101 |
aatttcattgtttacatttttcacataccttcagatatttgatacattcaattatgtttggacaaccattttaattaag |
179 |
Q |
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| T |
2112029 |
aatttcattgtttacatttttcacataccttcagatctttgatacattcaattatgtttggacaaccattttaattaag |
2112107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 2112134 - 2112177
Alignment:
| Q |
176 |
taagtgcatatataagtcatttctataataaaaagataaaataa |
219 |
Q |
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| T |
2112134 |
taagtgcatatataagtcatttctataataaaaagataaaataa |
2112177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 14156984 - 14156910
Alignment:
| Q |
56 |
atgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgtttacatttttcacatacctt |
131 |
Q |
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| T |
14156984 |
atgcaactattttaatgaagtttagaggattctaaattgtaaatcaatttcattgtttaga-ctttcacatacctt |
14156910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 14141244 - 14141198
Alignment:
| Q |
82 |
ggattctaaattgcaaatcaatttcattgtttacatttttcacatac |
128 |
Q |
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| T |
14141244 |
ggattctaaattgtaaatcagtttcattgtttacatttttcgcatac |
14141198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 1037156 - 1037271
Alignment:
| Q |
15 |
aagatgaagtaatgcagtatgcttgtgatgcaagtatagaaatgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgttta |
114 |
Q |
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||||| ||| |||||| ||| |||| | |||||||| | |||||| ||||||||||| ||||| | ||||||||||||| ||||| ||||||| ||||| |
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| T |
1037156 |
aagataaagcaatgcattatacttgggttgcaagtaaacaaatgccactattttaatcaagttcaggggattctaaattgtaaatcgatttcatagttta |
1037255 |
T |
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| Q |
115 |
catttttcacatacctt |
131 |
Q |
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|| |||||||||||||| |
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| T |
1037256 |
ca-ttttcacatacctt |
1037271 |
T |
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