View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12573_high_6 (Length: 268)
Name: NF12573_high_6
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 26446575 - 26446418
Alignment:
| Q |
91 |
tgagtttagctaatttgatagtatatttagtgagtagactgacatcttggttcttgaatatgcgagtagtttgttcctatagtctctaaatgtatcaaaa |
190 |
Q |
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| T |
26446575 |
tgagtttagctaatttgatagtatatttagtga-tagccagtcattttggtccttcaatatgcgacaagtttgttccaatagtctctaaatgtatcaaaa |
26446477 |
T |
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| Q |
191 |
ttacgaaaatatacttatatatgtattttgtttgtcatcttggttatcgtgagtgtcct |
249 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26446476 |
ttacaaaaatatacttatatatgtattttgtttgtcattttggttatcgtgagtgtcct |
26446418 |
T |
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Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 42619340 - 42619193
Alignment:
| Q |
91 |
tgagtttagctaatttgatagtatatttagtgagtagactgacatcttggttcttgaatatgcgagtagtttgttcctatagtctctaaatgtatcaaaa |
190 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
42619340 |
tgagtttaactaatttgatagtatattttgtgagtagactgtcattttggtccttgaatatgcgagtagtttgttcatatagtctctgaatatatcaaaa |
42619241 |
T |
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| Q |
191 |
ttacgaaaatatacttatatatgtattttgtttgtcatcttggttatc |
238 |
Q |
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| T |
42619240 |
ttacgaaaatataccaaaatatctattttgtttgtcattttggttatc |
42619193 |
T |
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