View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12573_low_1 (Length: 610)
Name: NF12573_low_1
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 195 - 559
Target Start/End: Complemental strand, 17888493 - 17888131
Alignment:
| Q |
195 |
agtaatacgagaggtgtgattccataaaaccacacactaaatttagcattgtacgaatgaacgaaagattgttcaacatctcagtcaaatacacttgagg |
294 |
Q |
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| T |
17888493 |
agtaatatgagaggtgtgattccataaaaccacacactaaatttagcattgtatgaatgaacgaaagattgttcaacatctcagtcagatacacttgagg |
17888394 |
T |
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| Q |
295 |
tgttagcttaatggtaagaacttaactttttaaattcccttagacacatttgt-aaatgaccattaatttcactt-ttattaattaaagtttctccttcn |
392 |
Q |
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| T |
17888393 |
tgttagcttaatggtaagaacttaactttttaaattcc-----acacatttgtaaaatgaccattgatttcaattgaaattaattaaagtttctccttca |
17888299 |
T |
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| Q |
393 |
nnnnnnctaaaaagttggtgaatgataacattgtgaatcatgcttattgctcaatcatgataaactacaaaataacc-attgatttaataacaaaataat |
491 |
Q |
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| T |
17888298 |
ttttttctaaaaagctggtgaatgataacattgtgaatcatgcttattgctcaatcatgataaactacaaaataaccaattgatttaataacaaaataat |
17888199 |
T |
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| Q |
492 |
acaaatgtaatctctactattgcannnnnnnattattaagtaaatgtatatagttcaccatgttaact |
559 |
Q |
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| T |
17888198 |
acaaatgtaatctctactattgcatttttttattattaagtaaatgtatatagttcaccatgttaact |
17888131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 17888809 - 17888735
Alignment:
| Q |
112 |
agaagtatacatccaaactaaacatctatctaataatgaatactttcgaacaaaggcaattaactaaataaaaccgata |
190 |
Q |
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| T |
17888809 |
agaagtatacatccaaactaaacatcta----ataatgaatactttcgaacaaaggcaattaactaaataaaaccgata |
17888735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 17888901 - 17888860
Alignment:
| Q |
21 |
atcatctagactataacaatgcagtgttatgccgttagatgg |
62 |
Q |
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| T |
17888901 |
atcatctagactataacaatgcagtgttatgccgttagatgg |
17888860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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