View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12573_low_2 (Length: 468)
Name: NF12573_low_2
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 21647568 - 21648010
Alignment:
| Q |
16 |
caaaatgaaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21647568 |
caaaatgaaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttg |
21647667 |
T |
|
| Q |
116 |
tcgtgccagaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21647668 |
tcgtgccagaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtg |
21647767 |
T |
|
| Q |
216 |
taaactctgccgccaggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21647768 |
taaactctgccgccaggacggttcctaccttccaaaacgacaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcac |
21647867 |
T |
|
| Q |
316 |
caataacaacaactgtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatgtggccattatgcaaaaggtaatcata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21647868 |
caataacaacaactgtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatgtggccattatgcaaaaggtaatcata |
21647967 |
T |
|
| Q |
416 |
agcagaattaatcaaatattcaaactccttgctcacaggttct |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
21647968 |
agcagaattaatcaaatattcaaactccttgctcacagtttct |
21648010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 453
Target Start/End: Original strand, 22770039 - 22770469
Alignment:
| Q |
23 |
aaccttggaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgcc |
122 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||||||||| || ||||||||| |
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|
| T |
22770039 |
aacctttgaatctatttccttatcgaccggctccccgttcggcttgaataaagggcaattgtctctaactttatgaagcggaattgaaagctgtcgtgcc |
22770138 |
T |
|
| Q |
123 |
agaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactc |
222 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||| |
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|
| T |
22770139 |
aaaaccgctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggccgcaaacttatcctcattccctatcttctgagtataaactc |
22770238 |
T |
|
| Q |
223 |
tgccgccaggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataac |
322 |
Q |
| |
|
| || |||||||||||| ||||||||||||| |||||||||||||||| |||| || ||||| || |||| ||| ||||||| |||||| |||||||| |
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|
| T |
22770239 |
taccaccaggacggttcttaccttccaaaacaacaaccttataaccaaacgacaaaagctgcctcgctgcagccaacccagcaaggccagccccaataac |
22770338 |
T |
|
| Q |
323 |
aacaactgtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatgtggccattatgcaaaaggtaatcataagcagaa |
422 |
Q |
| |
|
|||||| || |||| |||||||||||| || ||||| |||||||| ||||||| ||||||||||| || ||||||| |||||| || |||||||||||| |
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|
| T |
22770339 |
aacaaccgttccttccgtcgcctcaggcaactgagaagtaaatgatggcaaaaccccaaaattgatatgaccattatacaaaagatagtcataagcagaa |
22770438 |
T |
|
| Q |
423 |
ttaatcaaatattcaaactccttgctcacag |
453 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |
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|
| T |
22770439 |
ttaatcaaatgttcaaactccttggtcacag |
22770469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 39171227 - 39171011
Alignment:
| Q |
54 |
tccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccgctaaagggttagcatgaattccag |
153 |
Q |
| |
|
|||||| ||| |||| |||||||||||| | ||| ||| ||||||| ||||| || |||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
39171227 |
tccccactcgacttgtataaagggcaattaactctgactttatgaagtggaatagaaagttgtcgtgccagaaccgctaaa-ggtttgcatgaattccag |
39171129 |
T |
|
| Q |
154 |
taattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacggttcctaccttccaaaac |
253 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||||| ||| || |||||| | | | | |||||||| | ||||||||||| ||||||||||||||| |
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|
| T |
39171128 |
taattactctcccaccaagatctgggactgcaaacttacccttgttccctatcttctcaatataaactctcctgccaggacggtacctaccttccaaaac |
39171029 |
T |
|
| Q |
254 |
ggcaaccttataaccaaa |
271 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
39171028 |
cacaaccttgtaaccaaa |
39171011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 54 - 390
Target Start/End: Complemental strand, 39175128 - 39174795
Alignment:
| Q |
54 |
tccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccgctaaagggttagcatgaattccag |
153 |
Q |
| |
|
|||||| ||| |||| |||||| ||||| | ||| ||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
39175128 |
tccccactcgacttgtataaagagcaattaactctgactttatgaagtggaatacaaagttgtcgtgcca--accgctaaagg-ttagcatgaattccag |
39175032 |
T |
|
| Q |
154 |
taattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgccaggacggttcctaccttccaaaac |
253 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||||| |||| || |||||| | | | | ||||||| | ||||||| ||| ||||||||||||||| |
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|
| T |
39175031 |
taattactctcccaccaagatctgcgactgcaaacttaccctcgttccctatcttctcaatataaactcccctgccaggatggtacctaccttccaaaac |
39174932 |
T |
|
| Q |
254 |
ggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaactgtccctttcgtcgcctcaggaaaa |
353 |
Q |
| |
|
||||||| |||||||| || || | | ||| || |||| ||| ||| ||| |||| ||||||||||||| || |||||| | |||||| ||| || |
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|
| T |
39174931 |
cacaaccttgtaaccaaacaaaaatatctacctcgcagcagccaacccatcaaggccaacaccaataacaaccacgatcccttccatcgccttaggcaac |
39174832 |
T |
|
| Q |
354 |
tgagatgtaaatgaccgcaaaacaccaaaattgatgt |
390 |
Q |
| |
|
||||| ||||| || ||||||| |||||||| |||| |
|
|
| T |
39174831 |
tgagaagtaaacgaaggcaaaaccccaaaattaatgt |
39174795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 39175290 - 39175678
Alignment:
| Q |
30 |
gaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccg |
129 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||| |||| | | ||| | ||| ||| ||||||| ||||| || |||||| ||||||| || | |
|
|
| T |
39175290 |
gaatctatttatttatcaactggttccccattcagcttgtataacgagaaattaattctgactttatgaagtggaatagaaagttgttgtgccagtactg |
39175389 |
T |
|
| Q |
130 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgcc |
229 |
Q |
| |
|
||| | ||| |||||||||||||||||| || ||| |||| || ||| | ||||||||||| |||| | || ||||| ||||| |||||||| ||||| |
|
|
| T |
39175390 |
ctacatggtaagcatgaattccagtaataacactca-accacgacctatgactgcaaacttaccctcgcttcccatcctctgagtataaactctcccgcc |
39175488 |
T |
|
| Q |
230 |
aggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaact |
329 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| || |||| |||| |||||||| | |||| || ||| ||| | || ||||||||||||| || |
|
|
| T |
39175489 |
aggatggttcctaccttccaaaaccacaaccttgcaatcaaacgacaatagttgcctctcagcagaaaacccaacaaggacaacaccaataacaaccaca |
39175588 |
T |
|
| Q |
330 |
gtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatgtggccattatgcaaaaggtaatcataagca |
419 |
Q |
| |
|
|||||| | || ||||||||| | ||| ||||||| | || |||| |||| ||| |||||| |||||| |||||| || ||||||||| |
|
|
| T |
39175589 |
atcccttccatcatctcaggaaactaagaagtaaatggcagcgaaaccccaacattaatgtggtcattatacaaaagttattcataagca |
39175678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 452
Target Start/End: Original strand, 39171389 - 39171808
Alignment:
| Q |
30 |
gaatctatttccttatcaaccggatccccattcggcttgaataaagggcaatcaggtcttactgtatgaagcggaattgatagttgtcgtgccagaaccg |
129 |
Q |
| |
|
|||||||||| |||||||| || |||||||||| |||| |||| ||| ||| | ||| ||| ||| ||| ||||| || || |||||||| || || | |
|
|
| T |
39171389 |
gaatctatttatttatcaactggttccccattcgacttgtataacgggaaattaattctgactttataaagtggaatagaaagctgtcgtgctagtactg |
39171488 |
T |
|
| Q |
130 |
ctaaagggttagcatgaattccagtaattacgctcccaccaagatctaaggctgcaaacttatcctcattacctatcctttgagtgtaaactctgccgcc |
229 |
Q |
| |
|
||| | | | |||||||||||||||||| || ||| |||| || ||| | ||||||||||| |||| | || ||||| | ||| |||||||| |||| |
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|
| T |
39171489 |
ctacatgataagcatgaattccagtaataacactca-accacgacctacgactgcaaacttaccctcgcttcccatcctctaagtataaactct--cgcc |
39171585 |
T |
|
| Q |
230 |
aggacggttcctaccttccaaaacggcaaccttataaccaaataacaacagttgccttgccgcagtcaatccagcaatgccagcaccaataacaacaact |
329 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||| || |||| ||||||||||||| | |||| ||| ||| ||| | || |||| ||||||||||| |
|
|
| T |
39171586 |
aggatggttcataccttccaaaaccacaaccttgcaatcaaacgacaacagttgcctctcggcagccaacccatcaaggacaacaccgataacaacaaca |
39171685 |
T |
|
| Q |
330 |
gtccctttcgtcgcctcaggaaaatgagatgtaaatgaccgcaaaacaccaaaattgatgtggccattatgcaaaaggtaatcataagcagaattaatca |
429 |
Q |
| |
|
|||||| |||| ||||||| || ||||| ||||||| || |||| |||||||| || || |||||| |||||| || ||||||||| | ||| || |
|
|
| T |
39171686 |
atcccttccgtcacctcaggcaactgagaagtaaatggaagcgaaaccccaaaattaatatgctcattatacaaaagttattcataagcaaatgtaagca |
39171785 |
T |
|
| Q |
430 |
aatattcaaactccttgctcaca |
452 |
Q |
| |
|
||| |||| |||| || |||||| |
|
|
| T |
39171786 |
aatgttcatactcatttctcaca |
39171808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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