View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12573_low_3 (Length: 405)

Name: NF12573_low_3
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12573_low_3
NF12573_low_3
[»] chr7 (3 HSPs)
chr7 (17-393)||(39844873-39845248)
chr7 (112-381)||(22196949-22197217)
chr7 (112-381)||(22240604-22240872)
[»] chr3 (4 HSPs)
chr3 (15-393)||(1547597-1547974)
chr3 (110-375)||(52612790-52613054)
chr3 (110-381)||(42773724-42773994)
chr3 (219-375)||(31524698-31524853)
[»] chr8 (3 HSPs)
chr8 (33-251)||(27220356-27220574)
chr8 (67-248)||(32699516-32699697)
chr8 (130-384)||(5201145-5201398)
[»] chr5 (6 HSPs)
chr5 (164-378)||(1160453-1160666)
chr5 (30-395)||(2688189-2688551)
chr5 (31-140)||(36517534-36517643)
chr5 (29-153)||(11239351-11239475)
chr5 (223-372)||(10430270-10430418)
chr5 (262-302)||(9850737-9850777)
[»] chr6 (3 HSPs)
chr6 (112-381)||(20794294-20794561)
chr6 (130-381)||(14459318-14459568)
chr6 (70-328)||(2030796-2031052)
[»] chr2 (3 HSPs)
chr2 (214-375)||(38784786-38784946)
chr2 (163-331)||(4636777-4636944)
chr2 (293-384)||(36251064-36251155)
[»] chr4 (3 HSPs)
chr4 (114-251)||(55854883-55855020)
chr4 (32-248)||(7114944-7115160)
chr4 (57-153)||(38092895-38092991)
[»] chr1 (2 HSPs)
chr1 (166-209)||(52867174-52867217)
chr1 (164-242)||(21977363-21977441)
[»] scaffold0044 (1 HSPs)
scaffold0044 (57-153)||(43156-43252)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 39845248 - 39844873
Alignment:
Q  17 ggacatccaaatcttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctcca 116  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39845248 ggacaaccaaaccttacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctcca 39845149  T
Q  117 agacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacc 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  39845148 agacatcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacc 39845049  T
Q  217 tcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattc 316  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39845048 tcccatatcatacgcaatcccttccgaattttcttattaatagatccccc-actccaacattcccaatgaataattaaattcggtggcattacaaaattc 39844950  T
Q  317 aaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39844949 aaatctaaccacaacatcacattcaaccaaacattcctagccatgttacaatgaaggaagagatgcgatgaggtctc 39844873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 381
Target Start/End: Complemental strand, 22197217 - 22196949
Alignment:
Q  112 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 211  Q
    ||||| |||| |||||||||||||||||| | | ||||||| || ||| |  ||||||||||||| ||||||||||| ||  ||||||||||||||||      
T  22197217 ctccacgacaacacttttacctcctccactagcacatcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcc 22197118  T
Q  212 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 311  Q
    |  ||||||| ||||| || || || ||||||| ||||||  ||| ||  ||||| ||||||||| | |||||| ||||  |  ||||| | ||||| ||    
T  22197117 cggcctcccaaatcattcgtaacccgttccgaactttcttaataaaaggaccccc-actccaacacttccaatggataaaaaggttcggaggcattataa 22197019  T
Q  312 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 381  Q
    |||||||||| || ||  |||||| | |||||||||||||||  ||||  |||||||||||||| |||||    
T  22197018 aattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatg 22196949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 381
Target Start/End: Original strand, 22240604 - 22240872
Alignment:
Q  112 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 211  Q
    ||||| |||| |||||||||||||||||| | | ||||||| || ||| |  ||||||||||||| ||||||||||| ||  ||||||||||||||||      
T  22240604 ctccacgacaacacttttacctcctccactagcacatcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcc 22240703  T
Q  212 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 311  Q
    |  ||||||| ||||| || || || ||||||| ||||||  ||| ||  ||||| ||||||||| | |||||| ||||  |  ||||| | ||||| ||    
T  22240704 cggcctcccaaatcattcgtaacccgttccgaactttcttaataaaaggaccccc-actccaacacttccaatggataaaaaggttcggaggcattataa 22240802  T
Q  312 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 381  Q
    |||||||||| || ||  |||||| | |||||||||||||||  ||||  |||||||||||||| |||||    
T  22240803 aattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatg 22240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 1547974 - 1547597
Alignment:
Q  15 atggacatccaaatcttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctc 114  Q
    ||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1547974 atggacaaccaaaccttacctcaacaaacaatcttgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctt 1547875  T
Q  115 caagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattacca 214  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  1547874 caagacatcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggccatttctcgccttccaaatcacccaaattacca 1547775  T
Q  215 cctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaat 314  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  1547774 cctcccatatcatacgcaatcccttccaaattttcttgttaatagatccccc-actccaacattcccaatgaataattaaattcggtggcattacaaaat 1547676  T
Q  315 tcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547675 tcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 1547597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 375
Target Start/End: Original strand, 52612790 - 52613054
Alignment:
Q  110 acctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaat 209  Q
    ||||||| |||| |||||| |||| |||||| | |||||||||    ||||| |||||||| ||||| || ||||| |||||| |||| |  ||||||||    
T  52612790 acctccatgacaacactttcaccttctccacaagctcatcccatggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaaat 52612889  T
Q  210 taccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattac 309  Q
     ||||||||||| ||||| | ||||||||||||||| ||||| |  ||  |||||||| |||||||| ||||||||||| |  ||||| || | |||||     
T  52612890 caccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatcaatccccca-ctccaacactcccaatgaattaacaaatttggcggcattat 52612988  T
Q  310 aaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 375  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||  | |  ||||||||||||||    
T  52612989 aaaattcaaatcgagccacaacatcacatttaaccaaacattccttccgagatcacaatgaaggaa 52613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 381
Target Start/End: Original strand, 42773724 - 42773994
Alignment:
Q  110 acctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaat 209  Q
    |||||||||||| |||||| ||||||||||| |||||| |||| | |||  |  |||| || ||||| |  |||||||| ||  ||||||| ||||||||    
T  42773724 acctccaagacaacactttaacctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagccttccaaattacccaaat 42773823  T
Q  210 taccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattac 309  Q
     ||  ||||||| ||||||||||| || || || | |||||| |||| ||||||||| ||||||||| |||||||||||||  |  || || | ||| ||    
T  42773824 cacggcctcccaaatcatacgcaaaccattacggactttcttcttaagagatccccc-actccaacactcccaatgaataaagaggtttggaggcataac 42773922  T
Q  310 aaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 381  Q
    ||||| ||| || |||||  |||||| | ||||||||| |||||  ||||  || |||||||| ||||||||    
T  42773923 aaaatgcaagtccaaccaagacatcaaactcaaccaaatattccacgccaaatcgcaatgaagaaagagatg 42773994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 375
Target Start/End: Complemental strand, 31524853 - 31524698
Alignment:
Q  219 ccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaa 318  Q
    ||||||||| | ||| ||||||||||||||||| ||   || ||| || ||||||||| |||||||| ||||  ||||| || | |||||||||  | ||    
T  31524853 ccatatcattctcaagcccttccgaattttcttattcgaagttccacc-actccaacactcccaatggataaacaaatttggaggcattacaaagctaaa 31524755  T
Q  319 atctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 375  Q
    ||||| ||||  ||| |  || ||||||| |||||| |||| |||||||||||||||    
T  31524754 atctagccactccattagctttaaccaaatattccttgccaagtcacaatgaaggaa 31524698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 27220574 - 27220356
Alignment:
Q  33 cctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacc 132  Q
    ||||| |||||| || ||| | |||||| |||| |||||| ||| ||| || |||| ||| ||||| ||||| ||| | |||||||||| ||| || |||    
T  27220574 cctcatcaaacagtcccggggacaccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacc 27220475  T
Q  133 tcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgca 232  Q
    |||||||| ||||| ||||||   || || |||| ||| ||||| ||||||||||| ||| ||||||| | ||||||  || ||||||||||||||||||    
T  27220474 tcctccactaactcgtcccacaatgcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatcgccgcctcccatatcatacgca 27220375  T
Q  233 atcccttccgaattttctt 251  Q
    | |||||||| ||||||||    
T  27220374 aacccttccggattttctt 27220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 32699516 - 32699697
Alignment:
Q  67 tcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcat 166  Q
    ||||| |||||||| |||||||  |||||||| ||||| | | |||| ||||||| ||| || ||||||||||  || ||||||||||| | ||| ||||    
T  32699516 tcatacaacatacatgccggaatgttgaatcttcctaacaaccacctacaagacatcaccttaacctcctccattaagtcatcccaccttgtattctcat 32699615  T
Q  167 tattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaatttt 248  Q
    |||||||||| |   | ||||| ||  ||||||| |||||||| || | |||||  ||||||||| |||||||||| |||||    
T  32699616 tattaaaaatgcacccgtttcttgccttccaaattacccaaatcacaagctcccgaatcatacgcgatcccttccggatttt 32699697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 384
Target Start/End: Original strand, 5201145 - 5201398
Alignment:
Q  130 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 229  Q
    ||||||||||| |||||||||||||| ||| |  |||||||||||||     ||||||||||  ||||||| ||||||||| |  | | ||| ||||| |    
T  5201145 acctcctccactaactcatcccaccttgcaataacattattaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattc 5201244  T
Q  230 gcaatcccttccgaattttcttgttaatagatcccccaactcc-aacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccac 328  Q
     ||| ||||| || |||||||| ||||||  |  |||| | || ||||||||||||| |  | ||| || |||| |||||||||||||||||| ||||||    
T  5201245 tcaaacccttacggattttcttattaata--ttacccatcgcccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaaccac 5201342  T
Q  329 aacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcga 384  Q
    | |||||  || | ||||| ||| |||||||| || ||||| ||||| | ||||||    
T  5201343 accatcaagttaagccaaatatttctagccatatcgcaatggaggaaaatatgcga 5201398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 378
Target Start/End: Complemental strand, 1160666 - 1160453
Alignment:
Q  164 cattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcc 263  Q
    ||||||| || |||||||| ||||||||| |||| | |||||||||| || ||||||| |||| |||||| || ||||| |  || || || | |  |||    
T  1160666 cattattgaagatccggtcgtttctcgctttccataacacccaaattcccgcctcccaaatcaaacgcaaacctttccgcacctttttattcaaat-tcc 1160568  T
Q  264 cccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtc 363  Q
    |||  ||||||||||||||||||||||  ||||| || | ||||||||| |||||||  | ||||| ||||| |||||||||||||||||| || | |||    
T  1160567 ccccgctccaacattcccaatgaataaacaaatttggcggcattacaaagttcaaattaagccacatcatcaaattcaaccaaacattccttgcaaagtc 1160468  T
Q  364 acaatgaaggaagag 378  Q
    | |||||||||||||    
T  1160467 aaaatgaaggaagag 1160453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 2688189 - 2688551
Alignment:
Q  30 ttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcactttt 129  Q
    ||||||||| | ||| |||||| ||||||||||||| |||||| ||| ||| ||||||  |||  ||| || ||| | | ||||||| | || ||||||     
T  2688189 ttacctcaagagacactctcgg-ggcaccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacacttta 2688287  T
Q  130 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 229  Q
    ||||||||||| | ||| |||||||| |||||  ||||||||||||| |  |||||||| ||  ||||||  |||||||  ||  ||||||| ||||| |    
T  2688288 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 2688387  T
Q  230 gcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccaca 329  Q
    |||| || ||||| |||||||| || |  | |||||  ||||||||| |||||||| || | ||| || || | ||||| ||||| |||||| |||||      
T  2688388 gcaagccattccggattttcttatttagtggtcccc--actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaag 2688485  T
Q  330 acatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctctg 395  Q
    |||||  | ||||||||||||||| |||||  |||||||| || || ||||| || | ||||||||    
T  2688486 acatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggtggtctctg 2688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 36517643 - 36517534
Alignment:
Q  31 tacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcactttta 130  Q
    |||||||||||||| || |||  |||||||| ||| |||||| ||||||| ||||| ||||| ||||| ||||| | | ||||||||||||  ||||| |    
T  36517643 tacctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttca 36517544  T
Q  131 cctcctccac 140  Q
    ||||||||||    
T  36517543 cctcctccac 36517534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 11239351 - 11239475
Alignment:
Q  29 cttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttt 128  Q
    |||| ||||||||||| || | | | ||||||| ||| || ||| |||| || ||||| ||||| ||||| ||||| | | ||||||||||||  || ||    
T  11239351 cttatctcaacaaacactcgcagggacaccaacaccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaaaacctt 11239450  T
Q  129 tacctcctccaccaactcatcccac 153  Q
     ||||||||||| ||||||||||||    
T  11239451 cacctcctccactaactcatcccac 11239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 10430418 - 10430270
Alignment:
Q  223 atcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatct 322  Q
    ||||||||||| || |||| |||||||||||| ||   |||  || ||||||||||||||||||||||  ||||| || | ||| | ||| ||||| ||     
T  10430418 atcatacgcaaacctttcctaattttcttgttcatgactccggca-ctccaacattcccaatgaataaacaaatttgggggcatgataaagttcaagtcc 10430320  T
Q  323 aaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaag 372  Q
    ||||||  ||| |  |||||||||||| |||||||||  || ||||||||    
T  10430319 aaccaccccataagcttcaaccaaacactcctagccaaatcgcaatgaag 10430270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 9850737 - 9850777
Alignment:
Q  262 cccccaactccaacattcccaatgaataattaaattcggtg 302  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  9850737 ccccccactccaacattcccaatgaataaataaatttggtg 9850777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 381
Target Start/End: Complemental strand, 20794561 - 20794294
Alignment:
Q  112 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 211  Q
    |||||||||| |||||| ||||||||||| ||||||||| | || ||| |  ||||||||||| | |  |||||||| ||  ||||||||||||||||      
T  20794561 ctccaagacatcactttaacctcctccactaactcatcctatctagcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcc 20794462  T
Q  212 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 311  Q
    | |||||| | ||||| |||||  | ||||||| |||||| | || ||  |||||| |||||||| |||||||| ||||  |  ||||  | ||||| ||    
T  20794461 cgacctccaa-atcatccgcaactcgttccgaactttcttatgaaaaggaccccca-ctccaacactcccaatggataaaaaggttcgaaggcattataa 20794364  T
Q  312 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 381  Q
    |||||||||| |||||  |||||| | |||||||||||||||  ||||  ||||||||||||||||||||    
T  20794363 aattcaaatccaaccaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaagagatg 20794294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 381
Target Start/End: Complemental strand, 14459568 - 14459318
Alignment:
Q  130 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 229  Q
    |||||||| || | |||||||||||| ||| |  ||||||||||||| |  ||||| || ||   |||||| |||||||   | |||||||||||||| |    
T  14459568 acctcctcaacaagctcatcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcatcc 14459469  T
Q  230 gcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccaca 329  Q
    |||| ||||||||||| ||||| | ||| |||||||   ||||||||||||||||| ||||  |||||||| | ||| ||||||||||||||||||||      
T  14459468 gcaagcccttccgaatcttcttatgaattgatcccctg-ctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaag 14459370  T
Q  330 acatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 381  Q
     ||||| ||  ||||| |||||| | |||| ||| |||||||| || |||||    
T  14459369 tcatcaaatgtaaccacacattctttgccaagtcgcaatgaagaaaaagatg 14459318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 328
Target Start/End: Original strand, 2030796 - 2031052
Alignment:
Q  70 taaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattat 169  Q
    |||||||||||||||||| |||| ||||||||||| | | | ||||| || | ||| |||||||||||||| || |||||||||||  || |  | ||||    
T  2030796 taaaacatacacgccggagcattaaatctacctaacaaccatctccacgataacacctttacctcctccactaattcatcccaccttacaataac-ttat 2030894  T
Q  170 taaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaac 269  Q
    | |||||      |||||||||  ||||||||||||||||  | || | ||| ||||| | ||| |||||||| || ||||| |||| ||  |||||  |    
T  2030895 tgaaaataaccctatttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggatcttcttattaagagcaccccccgc 2030994  T
Q  270 tccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccac 328  Q
     |||||| |||||||| |||| |||||| |||| |||||||||||||||||| ||||||    
T  2030995 -ccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaaccac 2031052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 375
Target Start/End: Complemental strand, 38784946 - 38784786
Alignment:
Q  214 acctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaa 313  Q
    ||||||||||||||||||||||| ||||||||||||||||| | | ||||||| ||||||||||| || ||||||||  ||||| || | ||| | |||     
T  38784946 acctcccatatcatacgcaatcctttccgaattttcttgttgaaaaatccccc-actccaacatttccgatgaataaacaaattaggaggcataataaac 38784848  T
Q  314 ttcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 375  Q
      |||||||||||    ||||| ||| | |||||||||||| |||| ||||||||| |||||    
T  38784847 accaaatctaacctagtcatcaaattaagccaaacattcctcgccaagtcacaatgtaggaa 38784786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 331
Target Start/End: Original strand, 4636777 - 4636944
Alignment:
Q  163 tcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgt-taatagat 261  Q
    |||||||| ||||| ||  ||||||| ||| |||| |  |||||||||||||||||||| ||||| | ||||  ||| ||||| ||||| | |||| |      
T  4636777 tcattattgaaaatacgcccatttctagctttccacaaaacccaaattaccacctcccaaatcatcctcaatagctttcgaatcttcttatgtaatgg-- 4636874  T
Q  262 cccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccacaac 331  Q
    ||||| ||||||||| |||||||||||||  ||||| || | |||||||||||||||||| | |||||||    
T  4636875 ccccccactccaacactcccaatgaataaacaaattaggcggcattacaaaattcaaatcgagccacaac 4636944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 36251155 - 36251064
Alignment:
Q  293 aaattcggtgacattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcga 384  Q
    ||||| |||| |||||||||||||||||||||||||||||| |  || ||||||| |||| | ||||| |||||| |||| || ||||||||    
T  36251155 aaatttggtggcattacaaaattcaaatctaaccacaacattaagtttaaccaaatattcttcgccatatcacaaggaagaaaaagatgcga 36251064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 55854883 - 55855020
Alignment:
Q  114 ccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattacc 213  Q
    |||||||| |||||| ||||||||||  | ||||||||||||  ||||  |||| |||||||  | | ||||||| ||| ||||||| ||| |||| ||     
T  55854883 ccaagacatcactttcacctcctccataagctcatcccacctatcattcacattgttaaaaacactggcatttcttgctttccaaataaccaaaatcact 55854982  T
Q  214 acctcccatatcatacgcaatcccttccgaattttctt 251  Q
    |||||||| ||||||||||| ||| |||| | ||||||    
T  55854983 acctcccaaatcatacgcaaccccgtccgcactttctt 55855020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 7114944 - 7115160
Alignment:
Q  32 acctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttac 131  Q
    |||||| ||||||||| ||  | ||||||| ||| || || ||||| || ||||| | ||| ||||| ||||| | | ||||||| ||||  || || ||    
T  7114944 acctcatcaaacaatcccgaggacaccaacaccactcgtagaacatgcaagccgggatattaaatctccctaataaccacctccacgacataaccttgac 7115043  T
Q  132 ctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgc 231  Q
    ||||||||| |||||||||||||| ||  | ||||| || ||||| |   ||||||||||  ||||||| |||||||| || |||||||| ||||  | |    
T  7115044 ctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctc 7115143  T
Q  232 aatcccttccgaatttt 248  Q
    | ||||||||| |||||    
T  7115144 attcccttccggatttt 7115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 38092895 - 38092991
Alignment:
Q  57 ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccac 153  Q
    ||||| |||||||||||||||||| |||| || ||| ||||| ||||| | | || |||| || |  || || ||||||||||| ||||||||||||    
T  38092895 ccaacaccattcataaaacatacatgccgaaatattaaatctccctaataaccacttccatgatataaccttaacctcctccactaactcatcccac 38092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 52867217 - 52867174
Alignment:
Q  166 ttattaaaaatccggtcatttctcgctgtccaaatcacccaaat 209  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||    
T  52867217 ttattaaaaatccggtcatttctcgctttccaaataatccaaat 52867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 21977441 - 21977363
Alignment:
Q  164 cattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccg 242  Q
    ||||||||||||| || ||||| ||| || ||||||||||||| ||  | |||||||| ||||||||||| || |||||    
T  21977441 cattattaaaaatgcgttcattcctcactttccaaatcacccatatggcaacctcccaaatcatacgcaaacctttccg 21977363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 43252 - 43156
Alignment:
Q  57 ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccac 153  Q
    ||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | | || || ||||||  || || ||||| ||||| ||||||||||||    
T  43252 ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccac 43156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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