View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12573_low_4 (Length: 399)
Name: NF12573_low_4
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_low_4 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 32742230 - 32742615
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742230 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
32742329 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742330 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
32742429 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742430 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
32742529 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32742530 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
32742615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 35216620 - 35216235
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216620 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
35216521 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216520 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
35216421 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216420 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
35216321 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35216320 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
35216235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 23717251 - 23717636
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23717251 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
23717350 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23717351 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
23717450 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23717451 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
23717550 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23717551 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgctttcaggattatctctct |
23717636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 38223376 - 38222991
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223376 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
38223277 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223276 |
tacaagagtttcgttgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
38223177 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223176 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
38223077 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38223076 |
tattgttccttgactaactttcaactgaaatttttcctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
38222991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 9313573 - 9313958
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9313573 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcagtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
9313672 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9313673 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctatgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
9313772 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9313773 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
9313872 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9313873 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttacaggattatctctct |
9313958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 388
Target Start/End: Complemental strand, 42989154 - 42988771
Alignment:
| Q |
3 |
cactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42989154 |
cactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgagggta |
42989055 |
T |
|
| Q |
103 |
caagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctcc |
202 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42989054 |
cagaagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctcc |
42988955 |
T |
|
| Q |
203 |
atgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgata |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42988954 |
atgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgactgcttaagtgtgtttgata |
42988855 |
T |
|
| Q |
303 |
ttgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42988854 |
ttgttctttgactaacttttaactgaaattttccctcaagc--catctctacaagtctttttgtgtgcttgcaggattatctctct |
42988771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 3522876 - 3522491
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522876 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
3522777 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522776 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
3522677 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522676 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
3522577 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3522576 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
3522491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 10269219 - 10269604
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269219 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
10269318 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269319 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
10269418 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269419 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
10269518 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10269519 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
10269604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 335765 - 335380
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335765 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
335666 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335665 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
335566 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
335565 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
335466 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
335465 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcagaattatctctct |
335380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 43311398 - 43311498
Alignment:
| Q |
286 |
cttaagtgtgtttgatattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43311398 |
cttaagtgtgtttgatattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttatgtgcttgcaggattatctc |
43311495 |
T |
|
| Q |
386 |
tct |
388 |
Q |
| |
|
||| |
|
|
| T |
43311496 |
tct |
43311498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 14677344 - 14676959
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677344 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
14677245 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677244 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
14677145 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677144 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
14677045 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677044 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
14676959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 21395911 - 21395526
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395911 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
21395812 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395811 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
21395712 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395711 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
21395612 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395611 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
21395526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 45107103 - 45106718
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107103 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
45107004 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107003 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
45106904 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106903 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
45106804 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45106803 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
45106718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 1085604 - 1085989
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085604 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
1085703 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085704 |
tacaagagtttcattgtatctcttgccttctacaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
1085803 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085804 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
1085903 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1085904 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
1085989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 17195389 - 17195774
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17195389 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtacagaagttaaaatctgaatcatcatgaggg |
17195488 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195489 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
17195588 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195589 |
ccatatcaggatattttgcttgtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
17195688 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195689 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
17195774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 10485658 - 10485273
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10485658 |
cccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagtcatcctgtagagaagttaaaatctgaatcatcatgaggg |
10485559 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10485558 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtaaaaaccactcataaacaaccttct |
10485459 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10485458 |
ccacgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttaaccgcttaagtgtgtttga |
10485359 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10485358 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
10485273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 49550106 - 49550491
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49550106 |
cccactctcgccaaaaggatgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
49550205 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49550206 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
49550305 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49550306 |
ccatgtcaggatattttattggtttgtgtcttttgatctccgctcttcccttttctattccagtagagagatagtcatttgactgcttaagtgtgtttga |
49550405 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49550406 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtatgcttgcaggattatctctct |
49550491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 112 - 388
Target Start/End: Complemental strand, 5926651 - 5926377
Alignment:
| Q |
112 |
cattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcagga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5926651 |
cattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcagga |
5926552 |
T |
|
| Q |
212 |
tattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgatattgttcctt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5926551 |
tattttgctggtttgtgtcttttgatctccgctcttctcttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgatattgttcctt |
5926452 |
T |
|
| Q |
312 |
gactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5926451 |
gactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
5926377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 112 - 388
Target Start/End: Original strand, 27182471 - 27182746
Alignment:
| Q |
112 |
cattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcagga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27182471 |
cattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcagga |
27182570 |
T |
|
| Q |
212 |
tattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgatattgttcctt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27182571 |
tattttgctggtttgtgtcttttgatctccgctcttctcttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgatattgttcctt |
27182670 |
T |
|
| Q |
312 |
gactaactttcaactgaaattttccctcaagccgcatctctgcaagtc-tttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27182671 |
gactaactttcaactgaaattttccctcaagc--catctctgcaagtcttttttgtgtgcttgcaggattatctctct |
27182746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 44553312 - 44553697
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553312 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
44553411 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553412 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
44553511 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553512 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
44553611 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44553612 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
44553697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 38518174 - 38518559
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38518174 |
cccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
38518273 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38518274 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
38518373 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38518374 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagtagagagatagtcatttgaccgcttaagtgtgtttga |
38518473 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38518474 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcatgattatctctct |
38518559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 34945778 - 34945393
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945778 |
cccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
34945679 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34945678 |
tgcaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgttgtagaaaccactcataaacaacattct |
34945579 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945578 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
34945479 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34945478 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgctagtctttttgtgtgcttgcaggattatctctct |
34945393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 95 - 388
Target Start/End: Original strand, 27644504 - 27644795
Alignment:
| Q |
95 |
tgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27644504 |
tgagggtacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtaatattcacacgttcttgatgctgtagaaaccactcataaacaa |
27644603 |
T |
|
| Q |
195 |
ccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27644604 |
ccttctccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcaacagagagatagtcatttgaccgcttaagtgt |
27644703 |
T |
|
| Q |
295 |
gtttgatattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27644704 |
gtttgatattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
27644795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 110 - 388
Target Start/End: Complemental strand, 20394982 - 20394709
Alignment:
| Q |
110 |
ttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20394982 |
ttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttctccatgtcag |
20394883 |
T |
|
| Q |
210 |
gatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgatattgttcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20394882 |
gatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttgttattgttcc |
20394783 |
T |
|
| Q |
310 |
ttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20394782 |
ttgactaactttcaactgaaattttccctcaagc--catctctgcaagtc---ttgtgtgcttgcaggattatctctct |
20394709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 16641836 - 16642221
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641836 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
16641935 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16641936 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
16642035 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16642036 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
16642135 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16642136 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
16642221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 41774117 - 41773732
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41774117 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
41774018 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41774017 |
tacaagagtttcattgtatctcttgccttctacaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
41773918 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41773917 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
41773818 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41773817 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
41773732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 39081 - 39466
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39081 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcatgtagagaagttaaaatctgaatcatcatgaggg |
39180 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
39280 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39281 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
39380 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39381 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
39466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 14219177 - 14218792
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14219177 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
14219078 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14219077 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
14218978 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14218977 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
14218878 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14218877 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaagattatctctct |
14218792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 30704116 - 30704501
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30704116 |
cccactctcgccaaaacgatgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcatgtagagaagttaaaatctgaatcatcatgaggg |
30704215 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30704216 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
30704315 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30704316 |
ccatgtcaggatattttgttggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
30704415 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30704416 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
30704501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 2026884 - 2026499
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026884 |
cccactctcgacaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
2026785 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026784 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
2026685 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026684 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
2026585 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2026584 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
2026499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 43488277 - 43487892
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488277 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
43488178 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43488177 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaactttct |
43488078 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488077 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
43487978 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43487977 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
43487892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 37038771 - 37039156
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37038771 |
cccactctcgtcaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
37038870 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37038871 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
37038970 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37038971 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
37039070 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37039071 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catccctgcaagtctttttgtgtgcttgcaggattatctctct |
37039156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 3615493 - 3615108
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615493 |
cccactctcgtcaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
3615394 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3615393 |
tataagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgttgtagaaaccactcataaacaaccttct |
3615294 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3615293 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccacttaagtgtgtttga |
3615194 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615193 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
3615108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 23415870 - 23415485
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415870 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
23415771 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415770 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgaaattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
23415671 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23415670 |
ccatgtcaggatattttactggtttgtgtcttttgatctccgctcttcccatttctatttcagcagagagataatcatttgaccgcttaagtgtgtttga |
23415571 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415570 |
tattgttccttgactaactttcaactgaaactttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
23415485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 3535103 - 3534718
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535103 |
cccactctcgccaaaacgacgaaataactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
3535004 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3535003 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
3534904 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534903 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccctttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
3534804 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534803 |
tattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
3534718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 2272789 - 2272404
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272789 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
2272690 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272689 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
2272590 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272589 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
2272490 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272489 |
tattgttccttgattaactttcaactgaaatttttcctcaagc--catctctacaagtctttttgtgtgcttgcaggattatctctct |
2272404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 12533164 - 12532778
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12533164 |
cccactctcgccaaaatgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
12533065 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12533064 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaacattct |
12532965 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctgg-tttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttg |
299 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12532964 |
ccttgtcaggatattttgctggttttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttg |
12532865 |
T |
|
| Q |
300 |
atattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12532864 |
atattgttccttgactaactttcaactgaaattttccctcaagc--catctctgcaagtctttttgtgtgcttgcaggattatctctct |
12532778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 7356528 - 7356910
Alignment:
| Q |
1 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatttcccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7356528 |
cccactctcgccaaaacgacgaaatgactttatgccatgtcggtgcttgaatt-cccaagccatcctgtagagaagttaaaatctgaatcatcatgaggg |
7356626 |
T |
|
| Q |
101 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactcataaacaaccttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7356627 |
tacaagagtttcattgtatctcttgccttctgcaaaattaattctcctgtgatattcacacgttcttgatgctgtagaaaccactca--aacaaccttct |
7356724 |
T |
|
| Q |
201 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttcagcagagagatagtcatttgaccgcttaagtgtgtttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
7356725 |
ccatgtcaggatattttgctggtttgtgtcttttgatctccgctcttcccttttctatttccgcagagagatagtcatttgatcacttaagtgtgtttga |
7356824 |
T |
|
| Q |
301 |
tattgttccttgactaactttcaactgaaattttccctcaagccgcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7356825 |
tattgttccttgactaactttcaactgaaattttccctcaag--tcatctctgcaagtctttttgtgtgcttgcaggattatctctct |
7356910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 15608 - 15640
Alignment:
| Q |
356 |
agtctttttgtgtgcttgcaggattatctctct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15608 |
agtctttttgtgtgcttgcaggattatctctct |
15640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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