View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12573_low_5 (Length: 388)
Name: NF12573_low_5
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 42780958 - 42780603
Alignment:
| Q |
17 |
cggttacgacgcttgcaatcgttatgaaaactctaaattaaagggggattatgatgaaactgaaaaaagaagagaaatggcaaagaatttattggagagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780958 |
cggttacgacgcttgcaatcgttatgaaaactctaaattaaagggggattatgatgaaactgaaaaaagaagagaaatggcaaagaatttattggagagg |
42780859 |
T |
|
| Q |
117 |
tatacacattattatgagcggtgggctagcaaccaatcttcaaggcaaaaagctcttgctgatctacaccagatgcaaacggttcatatagagaagcttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780858 |
tatacacattattatgagcggtgggctagcaaccaatcttcaaggcaaaaagctcttgctgatctacaccagatgcaaacggttcatatagagaagcttc |
42780759 |
T |
|
| Q |
217 |
gtgacgcacagtgccaagctgaagcagagcttaagttcataaccgaggcttggttacaaatagttgagtgcaggcgggtattgaagtggacatatgcata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780758 |
gtgacgcacagtgccaagctgaagcagagcttaagttcataaccgaggcttggttacaaatagttgagtgcaggcgggtattgaagtggacatatgcata |
42780659 |
T |
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| Q |
317 |
tggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780658 |
tggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgc |
42780603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 29538933 - 29539239
Alignment:
| Q |
66 |
tatgatgaaactgaaaaaagaagagaaatggcaaagaatttattggagaggtatacacattattatgagcggtgggctagcaaccaatcttcaaggcaaa |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29538933 |
tatgatgaaactgaaaaaagaagagaaatggcaaagaaatcattggtgaagtacacacattattatgagcggtgggctacaaaccaatcttcaaggcaaa |
29539032 |
T |
|
| Q |
166 |
aagctcttgctgatctacaccagatgcaaacggttcatatagagaagcttcgtgacgcacagtgccaagctgaagcagagcttaagttcataaccgaggc |
265 |
Q |
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|||||||| |||||||||||||||||||||| |||||||| ||||| ||| ||||| |||||||||| |||| | |||||||||||||||||||||| |
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| T |
29539033 |
aagctcttactgatctacaccagatgcaaactgttcatatggagaatcttagtgacatacagtgccaacctgagtcgcagcttaagttcataaccgaggc |
29539132 |
T |
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| Q |
266 |
ttggttacaaatagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgag |
365 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||| |
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| T |
29539133 |
ttggttacagatagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagatgagcatgagcttgctaaaaagaagctctttgag |
29539232 |
T |
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| Q |
366 |
tacttgc |
372 |
Q |
| |
|
||||||| |
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| T |
29539233 |
tacttgc |
29539239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 69 - 372
Target Start/End: Original strand, 29553781 - 29554084
Alignment:
| Q |
69 |
gatgaaactgaaaaaagaagagaaatggcaaagaatttattggagaggtatacacattattatgagcggtgggctagcaaccaatcttcaaggcaaaaag |
168 |
Q |
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|||||||||| || |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
29553781 |
gatgaaactgtaattagaagagaaatggcaaagaaattattggagaagtacgcacattattatgagcggtgggctagtaacaattcttcaaggcaaaaag |
29553880 |
T |
|
| Q |
169 |
ctcttgctgatctacaccagatgcaaacggttcatatagagaagcttcgtgacgcacagtgccaagctgaagcagagcttaagttcataaccgaggcttg |
268 |
Q |
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| T |
29553881 |
ctcttgctgatctacaccagatgcaaactgttcatatgaagaagcttagtgtcatacagtgccaacctgagtcacagcttaagttcattaccgaggcttg |
29553980 |
T |
|
| Q |
269 |
gttacaaatagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtac |
368 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
29553981 |
gttacagatagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagctgagcatgagcatgctaaaaagcagctctttgagtac |
29554080 |
T |
|
| Q |
369 |
ttgc |
372 |
Q |
| |
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|||| |
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| T |
29554081 |
ttgc |
29554084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 42193884 - 42193980
Alignment:
| Q |
276 |
atagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42193884 |
atagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagccgagcatgagcatgctaaaaagcagttctttgagtacttgc |
42193980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 42191819 - 42191908
Alignment:
| Q |
66 |
tatgatgaaactgaaaaaagaagagaaatggcaaagaatttattggagaggtatacacattattatgagcggtgggctagcaaccaatct |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42191819 |
tatgatgaaactgaaaaaagaagagaaatggcaaagaattcattggagaggtacacacattattatgagcggtgggctagcaaccaatct |
42191908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 42192065 - 42192112
Alignment:
| Q |
156 |
tcaaggcaaaaagctcttgctgatctacaccagatgcaaacggttcat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42192065 |
tcaaggcaaaaagctcttgctgatctacaccagatgcaaactgttcat |
42192112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 42193126 - 42193193
Alignment:
| Q |
207 |
gagaagcttcgtgacgcacagtgccaagctgaagcagagcttaagttcataaccgaggcttggttaca |
274 |
Q |
| |
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||||||||| ||||| |||| |||||| |||| || | ||||||||||||||||||||||||||||| |
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| T |
42193126 |
gagaagcttagtgacacacaatgccaacctgagtcacaacttaagttcataaccgaggcttggttaca |
42193193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 25209267 - 25209356
Alignment:
| Q |
66 |
tatgatgaaactgaaaaaagaagagaaatggcaaagaatttattggagaggtatacacattattatgagcggtgggctagcaaccaatct |
155 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||| ||||||||| || || |||||||||||||||||||| |||||||||||| |
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| T |
25209267 |
tatgatgatactgaaagaagaagagaaatggcgaagaattcattggagagatacacccattattatgagcggtgggccagcaaccaatct |
25209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 25211719 - 25211815
Alignment:
| Q |
276 |
atagttgagtgcaggcgggtattgaagtggacatatgcatatggatactatttagcagagcatgagcatgctaaaaagcagttctttgagtacttgc |
372 |
Q |
| |
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||||||||||| ||| | || |||| ||||| ||||||||||| ||||||||| | ||||||||| ||| ||||| |||||||||||||| |||| |
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| T |
25211719 |
atagttgagtgtaggagagtgctgaaatggacgtatgcatatggttactatttacctgagcatgagggtgcaaaaaaacagttctttgagtatttgc |
25211815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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