View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12573_low_7 (Length: 357)
Name: NF12573_low_7
Description: NF12573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12573_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 36 - 338
Target Start/End: Complemental strand, 22040865 - 22040563
Alignment:
| Q |
36 |
gatatgtttgaagttggaattgcagatctacaactcaaaatgggatcttgttagattggagagtgaaatagtaaaagacaaataaatcaaaagcaaagaa |
135 |
Q |
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||||| ||| ||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22040865 |
gatatctttaaagttaggattgcagatctacaactcaaaaagggctcttgttagattggagagtgaaatagtaaaacacaaataaatcaaaagcaaagaa |
22040766 |
T |
|
| Q |
136 |
gttgcatgatgctcaaaagagcatgatgtgcgatgaataagagtctcgaccacatttgacaccgtgagtgcatatcaaaaactagagtctatagcagcat |
235 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
22040765 |
gttgcatgatgctcaaaagaacatgatgtgcgatgaataagagtctcaaccacatttgacacggtgagtgcatatcaaaaactagagtctatagcagtat |
22040666 |
T |
|
| Q |
236 |
tattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggatgtgcaccgaccatttaaacaaaatacaggaatataca |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22040665 |
tattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggatgtgcaccgaccatttaaacaaaatagaggaatataca |
22040566 |
T |
|
| Q |
336 |
ata |
338 |
Q |
| |
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||| |
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| T |
22040565 |
ata |
22040563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 22037943 - 22037672
Alignment:
| Q |
61 |
atctacaactcaaaatgggatcttgttagattggagagtgaaatagtaaaagacaaataaatcaaaagcaaagaagttgcatgatgctcaaaagagcatg |
160 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
22037943 |
atctacaactcaaaaagggatcttgttagattggagtgtgaaatagtaaaacacaaataaatcaaaagcaaagaagttgcatgatgctcaaaagggcacg |
22037844 |
T |
|
| Q |
161 |
atgtgcgatgaataagagtctcgaccacatttgacaccgtgagtgcatatcaaaaactagagtctatagcagcattattatcaagaacaagaaaataaat |
260 |
Q |
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|||||| || |||||||||||||||||| |||||| ||| || ||||||||| ||||| || |||||||||||||||||||||||||||| ||| || |
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| T |
22037843 |
atgtgccatccgtaagagtctcgaccacatatgacacaatgaatgtatatcaaaacctagactccatagcagcattattatcaagaacaagaatatatat |
22037744 |
T |
|
| Q |
261 |
agagtaaaatggttcttgctctgcaaatcagggtggatgtgcaccgaccatttaaacaaaatacaggaatatacaata |
338 |
Q |
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| |||||||||||||| |||||||||||| | |||| ||||||||||||||||||||| | |||||||||||| |
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| T |
22037743 |
aaagtaaaatggttctcactctgcaaatca----gcatgt--accgaccatttaaacaaaatagaagaatatacaata |
22037672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 22011702 - 22011555
Alignment:
| Q |
158 |
atgatgtgcgatgaataagagtctcgaccacatttgacaccgtgagtgcatatcaaaaactagagtctatagcagcattat----tatcaagaacaagaa |
253 |
Q |
| |
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|||| |||| |||||||| ||||| ||||||||| ||||| ||| | ||||||||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
22011702 |
atgacgtgccatgaataatagtcttgaccacattcgacacaatgaacgtatatcaaaaactagattctatagcagaattatatattatcaagaacaagaa |
22011603 |
T |
|
| Q |
254 |
aataaatagagtaaaatggttcttgctctgcaaatcagggtggatgtg |
301 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
22011602 |
tataaatcaagtaaaatggttcgcgctctgcaaatcagcgtggatgtg |
22011555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 22024022 - 22023951
Alignment:
| Q |
42 |
tttgaagttggaattgcagatctacaactcaaaatgggatcttgttagattggagagtgaaatagtaaaaga |
113 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22024022 |
tttgaagtttgtattgcagatctacaattcaaaatggactcttgttagattggagagtgaaatagtaaaaga |
22023951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 18323935 - 18323794
Alignment:
| Q |
163 |
gtgcgatgaataagagtctcg-accacatttgacaccgtgagtgcatatcaaaaactagagtctatag---cagcattattatcaagaacaagaaaataa |
258 |
Q |
| |
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|||| ||||||||||| || | ||||||| |||||| ||| || |||| |||||||||| ||||||| |||||| ||||||||||||||||| |||| |
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| T |
18323935 |
gtgccatgaataagaggcttgtaccacatgtgacacaatgaatgtatatgaaaaactagattctatagtagcagcatcattatcaagaacaagaatataa |
18323836 |
T |
|
| Q |
259 |
atagagtaaaatggttcttgctctgcaaatcagggtggatgt |
300 |
Q |
| |
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||| | ||||||| ||||||| | |||||||| |||||||| |
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| T |
18323835 |
ataaaataaaatgattcttgcgcagcaaatcaatgtggatgt |
18323794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 22029307 - 22029241
Alignment:
| Q |
184 |
accacatttgacaccgtgagtgcatatcaaaaactagagtctatagcagcattattatcaagaacaa |
250 |
Q |
| |
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|||||||| |||| |||| || |||| |||||||||| |||||||||||||| ||||||||||||| |
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| T |
22029307 |
accacattccacactgtgaatgtatattaaaaactagattctatagcagcattgttatcaagaacaa |
22029241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 10204434 - 10204499
Alignment:
| Q |
84 |
tgttagattggagagtgaaatagtaaaagacaaataaatcaaaagcaaagaagttgcatgatgctca |
150 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
10204434 |
tgttagattggagagtgaaatagtaaaacacaaataaatcaaaagc-aagaagttgcataatgctca |
10204499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 3233537 - 3233648
Alignment:
| Q |
42 |
tttgaagttggaattgcagatctacaactcaaaatgggatcttgttagattggagagtgaaatagtaaaagacaaataaatcaaaagcaaagaagttgca |
141 |
Q |
| |
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||||||||||| ||||||||||| || |||||| || | |||||||| | ||||||||||| |||| |||| |||||||||||| ||||||||||| |
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| T |
3233537 |
tttgaagttgggattgcagatctgcagttcaaaaaggacttgtgttagatggaagagtgaaatatcaaaacacaactaaatcaaaagc-aagaagttgca |
3233635 |
T |
|
| Q |
142 |
tgatgctcaaaag |
154 |
Q |
| |
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| ||||||||||| |
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| T |
3233636 |
taatgctcaaaag |
3233648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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