View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12574_high_1 (Length: 419)

Name: NF12574_high_1
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12574_high_1
NF12574_high_1
[»] chr5 (15 HSPs)
chr5 (8-401)||(34743507-34743899)
chr5 (210-298)||(12425543-12425631)
chr5 (173-331)||(39105403-39105562)
chr5 (190-283)||(2568645-2568738)
chr5 (221-278)||(12494820-12494877)
chr5 (258-335)||(28586824-28586901)
chr5 (153-277)||(32172646-32172770)
chr5 (210-297)||(7319379-7319466)
chr5 (152-231)||(12521567-12521646)
chr5 (195-298)||(17258878-17258981)
chr5 (205-330)||(4014429-4014554)
chr5 (205-298)||(9202753-9202846)
chr5 (197-270)||(11707055-11707128)
chr5 (196-232)||(17827562-17827598)
chr5 (210-242)||(26618201-26618233)
[»] chr1 (23 HSPs)
chr1 (195-283)||(7136993-7137081)
chr1 (195-298)||(34290208-34290311)
chr1 (152-339)||(6292424-6292610)
chr1 (199-298)||(37842354-37842453)
chr1 (153-298)||(31517693-31517838)
chr1 (197-286)||(35017560-35017649)
chr1 (152-242)||(3224451-3224541)
chr1 (190-271)||(10744300-10744381)
chr1 (195-242)||(5886989-5887036)
chr1 (195-238)||(10199403-10199446)
chr1 (207-298)||(24915058-24915149)
chr1 (179-242)||(30815632-30815695)
chr1 (218-331)||(7472251-7472363)
chr1 (159-232)||(38170649-38170722)
chr1 (205-242)||(38503470-38503507)
chr1 (205-298)||(51695500-51695592)
chr1 (210-242)||(15687356-15687388)
chr1 (190-270)||(27140478-27140558)
chr1 (190-238)||(28689442-28689490)
chr1 (258-326)||(29666367-29666434)
chr1 (152-248)||(32515393-32515489)
chr1 (205-297)||(38018369-38018461)
chr1 (195-295)||(41195188-41195288)
[»] chr6 (12 HSPs)
chr6 (218-331)||(9093574-9093687)
chr6 (170-328)||(31624200-31624358)
chr6 (154-318)||(1402948-1403112)
chr6 (153-223)||(27595520-27595590)
chr6 (218-271)||(835267-835320)
chr6 (179-312)||(2027385-2027518)
chr6 (205-298)||(13907557-13907650)
chr6 (173-298)||(28641722-28641847)
chr6 (197-238)||(29296292-29296333)
chr6 (190-271)||(31624089-31624170)
chr6 (258-298)||(3785758-3785798)
chr6 (152-232)||(11600826-11600906)
[»] chr2 (20 HSPs)
chr2 (173-298)||(33256712-33256837)
chr2 (190-298)||(29316765-29316873)
chr2 (196-282)||(1893277-1893363)
chr2 (208-298)||(18066100-18066190)
chr2 (195-298)||(1625872-1625976)
chr2 (206-242)||(41407632-41407668)
chr2 (154-238)||(43529812-43529896)
chr2 (190-285)||(680488-680583)
chr2 (204-271)||(36415677-36415744)
chr2 (197-232)||(44443359-44443394)
chr2 (205-295)||(26626848-26626938)
chr2 (205-242)||(7928304-7928341)
chr2 (153-238)||(12313126-12313211)
chr2 (218-295)||(33319830-33319907)
chr2 (205-238)||(35378537-35378570)
chr2 (210-298)||(11513870-11513958)
chr2 (151-283)||(18179191-18179323)
chr2 (205-285)||(28039337-28039417)
chr2 (195-283)||(43984998-43985086)
chr2 (266-318)||(44439426-44439478)
[»] chr8 (8 HSPs)
chr8 (196-283)||(29417700-29417787)
chr8 (171-337)||(7646139-7646305)
chr8 (199-242)||(30389127-30389170)
chr8 (153-270)||(11569410-11569527)
chr8 (196-240)||(2594993-2595037)
chr8 (196-240)||(11118993-11119037)
chr8 (207-271)||(27028830-27028894)
chr8 (190-298)||(42215296-42215404)
[»] chr7 (10 HSPs)
chr7 (256-339)||(9527146-9527229)
chr7 (204-277)||(2825235-2825308)
chr7 (152-231)||(33894666-33894745)
chr7 (153-248)||(42839932-42840027)
chr7 (190-240)||(28727753-28727803)
chr7 (160-270)||(39345471-39345581)
chr7 (196-285)||(30535548-30535637)
chr7 (184-248)||(9038134-9038197)
chr7 (152-236)||(12242278-12242362)
chr7 (154-230)||(12834916-12834992)
[»] chr3 (14 HSPs)
chr3 (205-298)||(21367639-21367732)
chr3 (197-298)||(52618975-52619076)
chr3 (165-337)||(27792805-27792977)
chr3 (198-242)||(33883748-33883792)
chr3 (170-238)||(54837004-54837072)
chr3 (195-298)||(24785177-24785280)
chr3 (196-298)||(33405162-33405265)
chr3 (165-242)||(30443921-30443999)
chr3 (32-90)||(31055061-31055119)
chr3 (208-318)||(32095199-32095309)
chr3 (279-337)||(41028930-41028988)
chr3 (204-242)||(41057182-41057220)
chr3 (197-233)||(29637596-29637632)
chr3 (197-245)||(45432936-45432984)
[»] chr4 (8 HSPs)
chr4 (190-285)||(30066756-30066851)
chr4 (190-231)||(29263409-29263450)
chr4 (174-231)||(29467598-29467655)
chr4 (152-232)||(2996611-2996691)
chr4 (211-274)||(27405804-27405868)
chr4 (198-298)||(28300297-28300397)
chr4 (171-231)||(43824322-43824382)
chr4 (152-228)||(54277275-54277351)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 34743507 - 34743899
Alignment:
Q  8 atgagatggacatcacttttgggaccaaaaggggtggcatctatactcaatcaaaccagcagcatttataggaatctgaaagtaaaatcaaaatctcatg 107  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743507 atgagatggacaatacttttgggaccaaaaggggtggcatctatactcaatcaaaccagcagcatttataggaatctgaaagtaaaatcaaaatctcatg 34743606  T
Q  108 agtgttaatatagcctgtcttgactagcttttttgagtttatgtacataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgt 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  34743607 agtgttaatatagcctgtcttgactagctttttcgagtttatgtacataagcacttttgagcctgtttggtagagtttatacaaacagcttatgaaatgc 34743706  T
Q  208 tcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttatttt 307  Q
    ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  34743707 tcacaagttattttcagctta-ttttataagttctacatgatagcgtttgaaaactgcttatagtttatacgaaaacagattgactttattatctatttt 34743805  T
Q  308 gttattgaaattgcgtatacataaccacttgtgccatgcgtgtctatgctataagcggttaattaagcttgtttttctcaaacagggcctaaat 401  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34743806 gttattgaaattgcgtatacataaccacttgtgcaatgcgtgtctatgctataagcggttaattaagcttgcttttcgcaaacagggcctaaat 34743899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 12425631 - 12425543
Alignment:
Q  210 ataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    ||||||| |||||| |||||||| ||||||||| || || ||| | ||||||| |||||||| |||||||||||||  |||||||||||    
T  12425631 ataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttatt 12425543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 331
Target Start/End: Complemental strand, 39105562 - 39105403
Alignment:
Q  173 tttggtagagtttatacaaacggcttatgaaat-gttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    ||||| ||| |||||  |||| |||||||| || ||||||||| |||||| |||||||||| ||||||||| || || ||| | ||||||| | ||||||    
T  39105562 tttgggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatag 39105463  T
Q  272 tttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataa 331  Q
     |||||||||||||  ||||||| |||   ||||| | ||| ||||| || |||||||||    
T  39105462 cttatacgaaaacaatttaacttcatttcatatttagctatagaaatagcttatacataa 39105403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 2568738 - 2568645
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaa 283  Q
    |||| |||||||| || ||||||||||||||| |||||||||| || || ||| ||||| ||| | |||||||  ||||||| |||||||||||    
T  2568738 aaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaaa 2568645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 12494820 - 12494877
Alignment:
Q  221 tcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatac 278  Q
    ||||||||||||||||||||||||| || ||| | ||||||| |||||||| ||||||    
T  12494820 tcagcttatttttataagttctacacgatagcctatgaaaacagcttatagcttatac 12494877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 28586824 - 28586901
Alignment:
Q  258 aaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccac 335  Q
    ||||| ||||||| |||||| |||||||| || |||||||| | | ||||||||| ||||| | ||||||||||||||    
T  28586824 aaaacagcttataatttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataaccac 28586901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 32172770 - 32172646
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagc 252  Q
    ||||||||||| ||||   |||||| |||| ||||  ||||  ||||||| |||| ||||||  |||||||||||||||  || |||||| ||||| |||    
T  32172770 cataagcacttgtgagatagtttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagc 32172671  T
Q  253 gtttgaaaactgcttatagtttata 277  Q
     | ||||||| |||||||| |||||    
T  32172670 ttatgaaaacagcttatagcttata 32172646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 7319466 - 7319379
Alignment:
Q  210 ataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttat 297  Q
    |||||||  |||||||||||||||||||||||| || || ||| |  |||||| | |||||| ||||| |||||||  ||||||||||    
T  7319466 ataagttgctttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaactttat 7319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 12521646 - 12521567
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttattt 231  Q
    |||||| || ||||||| |||||||| |||| || || || | |||||||| ||||||||||| | ||||||||||||||    
T  12521646 acataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagctgttttcagcttattt 12521567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 17258878 - 17258981
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactt 294  Q
    |||||||| ||||||||||| | ||||||||||||||| ||||| ||| || || ||  | ||||||| |||||| | || |||||||| || || ||||    
T  17258878 gcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttattgattgtacgaaaatagtttgactt 17258977  T
Q  295 tatt 298  Q
    ||||    
T  17258978 tatt 17258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 330
Target Start/End: Original strand, 4014429 - 4014554
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttat 304  Q
    |||||||||| | ||||||||||||||| ||||||||| || || ||| | ||||||| ||||||  ||| | | ||||||   |||||||||| | | |    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatcatttttccaaaaacaatctaactttattttatct 4014528  T
Q  305 tttgttattgaaattgcgtatacata 330  Q
    |||| ||| ||||| || ||||||||    
T  4014529 tttgctatagaaatagcttatacata 4014554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 9202753 - 9202846
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||||||||| | ||| ||||||||||| ||||||||| || || | | | ||||||| |||||| | ||||| |||||||  |||||||||||    
T  9202753 tgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaactttatt 9202846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 11707128 - 11707055
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttata 270  Q
    |||||| ||||| ||||||| ||||||||||||||| | ||| |||||| || ||| | ||||||| |||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 17827598 - 17827562
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttt 232  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  17827598 cttatgaaatgttcgtaaattattttcagcttatttt 17827562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 26618233 - 26618201
Alignment:
Q  210 ataagttattttcagcttatttttataagttct 242  Q
    ||||||| |||||||||||||||||||||||||    
T  26618233 ataagttgttttcagcttatttttataagttct 26618201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 7136993 - 7137081
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaa 283  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||| || || ||| | ||||||| |||||||| |||||| ||||    
T  7136993 gcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattatacaaaaa 7137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 34290311 - 34290208
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactt 294  Q
    |||||||| || |||||||||| ||||||||||||||| ||||||||| || || ||| | ||||||| |||||||| |||||| |||  | ||||||||    
T  34290311 gcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatacaaaataaaattaactt 34290212  T
Q  295 tatt 298  Q
    ||||    
T  34290211 tatt 34290208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 339
Target Start/End: Complemental strand, 6292610 - 6292424
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacag 251  Q
    |||||||||||||||||  ||||||| ||| ||| || |||| |||||||| ||||||||||| | ||||||||||||||| ||||| ||| ||  | ||    
T  6292610 acataagcacttttgagattgtttgggagaattttta-aaacagcttatgacatgttcataagctgttttcagcttattttcataagctctccaaaatag 6292512  T
Q  252 cgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccacttgt 339  Q
      |  |||||  |||||||  ||||  ||||| |  || |||||||||||| ||||||||| ||||| || |||||| || |||||||    
T  6292511 tttacgaaaatagcttataagttatgtgaaaataatttgactttattattttttttgttatagaaatggcttatacagaagcacttgt 6292424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 37842354 - 37842453
Alignment:
Q  199 atgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||| |||||||||||   ||||||||||||||||||||||||| || || ||| | |||||||  ||||||| |||| |||| |||| |||||||||||    
T  37842354 atgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttatagcttattcgaacacagtttaactttatt 37842453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 31517693 - 31517838
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagc 252  Q
    ||||||||||| |||| |||||||| |||  ||||  ||||  || |||| ||||||||||| | ||||||||||||||| ||||| ||| || |||||     
T  31517693 cataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaagacaga 31517792  T
Q  253 gtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
     | |||| || |||||||| ||||| |||| ||  |||||||||||    
T  31517793 ttatgaagacagcttatagcttatatgaaatcaatttaactttatt 31517838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 35017649 - 35017560
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacag 286  Q
    |||||| |||| ||||||||||||||| |||||||  ||||| ||| || |||||| | ||||||| || ||||| ||||||||||||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaacagcatatagattatacgaaaacag 35017560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 3224541 - 3224451
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttct 242  Q
    |||||||||||| |||  || ||||  ||| |||||||||||  ||||||| |||| |||||||| || |||||||||||| |||||||||    
T  3224541 acataagcacttgtgacactatttgagagaatttatacaaactacttatgacatgtccataagttgttctcagcttattttcataagttct 3224451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 10744381 - 10744300
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    |||| |||||||  ||||||||||| | |||||| ||||||||||||||||||  | |||||| | ||||||| ||||||||    
T  10744381 aaacagcttatggcatgttcataagctgttttcatcttatttttataagttctctaagacagcttatgaaaacagcttatag 10744300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 5886989 - 5887036
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttct 242  Q
    |||||||| ||||||||||||| |||||||||||||||  ||||||||    
T  5886989 gcttatgacatgttcataagttgttttcagcttattttcgtaagttct 5887036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 10199403 - 10199446
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||    
T  10199403 gcttatgacatgttcataagttgttttcagcttattttcataag 10199446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 24915058 - 24915149
Alignment:
Q  207 ttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||||||| | |||||| |||||||| | ||||||| || |||||| | ||||||| ||||||||  ||||| ||||||  |||||||||||    
T  24915058 ttcataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttatt 24915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 30815632 - 30815695
Alignment:
Q  179 agagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttct 242  Q
    |||| ||||| |||| |||||||| ||||||||||  | ||||||||||||||| |||||||||    
T  30815632 agagcttatataaacagcttatgacatgttcataaaatgttttcagcttattttcataagttct 30815695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 7472363 - 7472251
Alignment:
Q  218 ttttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaa 317  Q
    ||||||||||||||| ||||| ||| || || ||| | || |||| |||||||| |||||| ||||||  ||||| ||||||| | ||||||||| ||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattatacaaaaacaatttaac-ttattatatcttttgttatagaaa 7472265  T
Q  318 ttgcgtatacataa 331  Q
    | || |||| ||||    
T  7472264 tagcttataaataa 7472251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 38170649 - 38170722
Alignment:
Q  159 cacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttt 232  Q
    ||||| |||| ||| |||| |||| ||||  |||| |||||||| ||||||||||||| |||||||||| ||||    
T  38170649 cacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgtttt 38170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 38503470 - 38503507
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttct 242  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttct 38503507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 51695500 - 51695592
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||||||||| ||||||||||||||||| |||| |||| || || ||| | |||||||  || |||  ||||||||||||| ||| ||||||||    
T  51695500 tgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataacttatacgaaaaca-atttactttatt 51695592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 15687356 - 15687388
Alignment:
Q  210 ataagttattttcagcttatttttataagttct 242  Q
    ||||||||||||||||| |||||||||||||||    
T  15687356 ataagttattttcagctcatttttataagttct 15687388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 27140558 - 27140478
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttata 270  Q
    |||| |||||||| |||| |||||||| ||||||||||||||  ||||| ||| ||||| ||| | | ||||| |||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 28689442 - 28689490
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    |||| |||||||| |||| |||||||| ||||||||||||||| |||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataag 28689490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 29666367 - 29666434
Alignment:
Q  258 aaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtata 326  Q
    ||||| |||||||||||||| ||||||| ||  |||||||| | | ||||||||||||||| |||||||    
T  29666367 aaaacagcttatagtttatatgaaaaca-atatactttattttatcttttgttattgaaatagcgtata 29666434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 32515393 - 32515489
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatga 248  Q
    |||||||||||| |||| |||||||| |||| ||||  |||| || ||||| ||||  ||||||| |||||| ||||| | |||||| ||| |||||    
T  32515393 acataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatga 32515489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 38018369 - 38018461
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttat 297  Q
    ||||||| || ||||||||||||||||| || | |||| || || |  || ||||||| |||| ||| |||||||||||||  ||||||||||    
T  38018369 tgttcattaggtattttcagcttattttcatgaattctccaagataatgtatgaaaacagcttctagcttatacgaaaacaatttaactttat 38018461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 41195188 - 41195288
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactt 294  Q
    |||||||| || || ||||| | ||||||||||||||| ||||||||| || || ||  | ||||||| | | ||||| ||||| ||||||| |||||||    
T  41195188 gcttatgacattttaataagcttttttcagcttattttcataagttctccaagatagtttatgaaaacagttgatagtatatacaaaaacagtttaactt 41195287  T
Q  295 t 295  Q
    |    
T  41195288 t 41195288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 331
Target Start/End: Original strand, 9093574 - 9093687
Alignment:
Q  218 ttttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaa 317  Q
    |||||||||||||||  ||||||||  | |||||| | ||||||| |||||||| |||||||||||||  ||||||||||| | | ||||| ||| ||||    
T  9093574 ttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaa 9093673  T
Q  318 ttgcgtatacataa 331  Q
    | || ||| |||||    
T  9093674 tagcttatccataa 9093687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 31624358 - 31624200
Alignment:
Q  170 ctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttat 269  Q
    |||||||||||| |||||  |||| ||| |||| |||| ||||||||||||| |  ||||||| |||| |||  || |||||| | | ||||| ||| ||    
T  31624358 ctgtttggtagaatttatgaaaacagctcatgacatgtccataagttattttaatgttattttcataatttcaccaagacagcttattaaaacagctaat 31624259  T
Q  270 agtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtataca 328  Q
    || |||||||||||||  ||||  ||||| | | ||||||||| ||||| || ||||||    
T  31624258 agattatacgaaaacaatttaaacttattttatcttttgttatagaaatagcttataca 31624200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 318
Target Start/End: Complemental strand, 1403112 - 1402948
Alignment:
Q  154 ataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcg 253  Q
    |||||||||| |||| |||| ||| |||||||||  ||||  ||||||| || |  ||||  ||| ||||||| |||| |||||| ||| ||||| |||     
T  1403112 ataagcacttgtgagactgtgtgggagagtttatcgaaacaacttatgacatatctataaactatattcagctaatttctataagatctccatgatagct 1403013  T
Q  254 tttgaaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaat 318  Q
    | |||||||   |||||| ||||| ||||| || ||||||||||| | | ||||||||| |||||    
T  1403012 tatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaat 1402948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 27595520 - 27595590
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttca 223  Q
    ||||||||||| |||| |||||||| ||| |||||  ||||  ||||||| ||||||||||| ||||||||    
T  27595520 cataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctattttca 27595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 835267 - 835320
Alignment:
Q  218 ttttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    ||||||||||||||| ||||||||| || || ||| | ||||||||||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatag 835320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 2027385 - 2027518
Alignment:
Q  179 agagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatac 278  Q
    |||||||||  |||| |||||||| || | |||||| | |||||||||||||| | |||  ||||||||  ||| | ||| ||| |||||||| |||||     
T  2027385 agagtttatgaaaacagcttatgacatttccataagctgttttcagcttatttatttaaactctacatgctagcttatgagaacagcttataggttatat 2027484  T
Q  279 gaaaacagattaactttattatttattttgttat 312  Q
    ||||| || || |||||||| | | |||||||||    
T  2027485 gaaaatagtttgactttattttatcttttgttat 2027518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 13907650 - 13907557
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||||| ||||||||||||| ||||||| |||| |||| || ||  || | |||||||  ||||||| ||||||||||  | ||||||||||||    
T  13907650 tgttcacaagttattttcagtttattttcataatttctccaagatggcttatgaaaacaacttataggttatacgaaagtaaattaactttatt 13907557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 28641722 - 28641847
Alignment:
Q  173 tttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagt 272  Q
    ||||| |||| ||||  |||| |||||| | ||||||||||| | |||| |||||||||| ||||| ||| ||  | |||  |||||||| | ||||||     
T  28641722 tttggcagagcttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctctgcagaatagctattgaaaacagtttatagc 28641821  T
Q  273 ttatacgaaaacagattaactttatt 298  Q
    ||| || |||||||||| ||||||||    
T  28641822 ttaaactaaaacagattgactttatt 28641847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 29296292 - 29296333
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  29296292 ttatgacatgtccataagttattttcagcttattttcataag 29296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 31624170 - 31624089
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    |||| |||||||| ||||||||||| | |||||| |||||||| |||| |||| || || ||| | ||||||| ||||||||    
T  31624170 aaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatag 31624089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 3785758 - 3785798
Alignment:
Q  258 aaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  3785758 aaaacagcttatagcttatacgaaaacagtttaactttatt 3785798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 11600826 - 11600906
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttt 232  Q
    |||||| ||||| |||| |||||| ||||||||| |  |||| |||||||| |||| || ||  |||||||||||||||||    
T  11600826 acataaacacttgtgaggctgttttgtagagtttttgaaaacagcttatgacatgtccaaaaactattttcagcttatttt 11600906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 33256837 - 33256712
Alignment:
Q  173 tttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagt 272  Q
    ||||| |||| ||||  |||| |||||||| ||||||||||  | || |||||||||||| ||| | ||| || ||  || | |||||||||||||||||    
T  33256837 tttgggagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggcttatgaaaactgcttatagt 33256738  T
Q  273 ttatacgaaaacagattaactttatt 298  Q
    ||||| |||||||| || ||||||||    
T  33256737 ttatatgaaaacagtttgactttatt 33256712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 29316765 - 29316873
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagatt 289  Q
    |||| |||||||| ||||||||||||| ||||||||||||||  ||||||||| || || |||   ||||||| |||||||| ||||  |||||||  ||    
T  29316765 aaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatagattatgtgaaaacaattt 29316864  T
Q  290 aactttatt 298  Q
    ||| |||||    
T  29316865 aaccttatt 29316873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 1893277 - 1893363
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaa 282  Q
    ||||||| |||| |||||||||||||||||||||||| | ||||||| || || ||| |  |||||| |||||||| || |||||||    
T  1893277 cttatgacatgtacataagttattttcagcttattttcacaagttctccaagatagcttccgaaaacagcttatagcttttacgaaa 1893363  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 18066190 - 18066100
Alignment:
Q  208 tcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    ||||||| |||||||| ||||||||  |||||||| || || ||| | ||||||| |||||||| ||||| |||||||  |||||||||||    
T  18066190 tcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttatt 18066100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 1625976 - 1625872
Alignment:
Q  195 gcttatga-aatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaact 293  Q
    |||||||| |||||||||||| | ||||||||| |||||  |||||||| || || ||| | |||||||  ||||||  |||||||||||||  ||||||    
T  1625976 gcttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaacttataacttatacgaaaacaatttaact 1625877  T
Q  294 ttatt 298  Q
    |||||    
T  1625876 ttatt 1625872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 41407668 - 41407632
Alignment:
Q  206 gttcataagttattttcagcttatttttataagttct 242  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41407668 gttcataagttgttttcagcttatttttataagttct 41407632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 43529812 - 43529896
Alignment:
Q  154 ataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    |||||||||| |||  |||||||| ||| |||||  |||| |||||||  ||||||||||| ||||||||| ||||||| |||||    
T  43529812 ataagcacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcataagctattttcagtttattttcataag 43529896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 680583 - 680488
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaaca 285  Q
    |||| |||||||| ||||| ||||  | ||||||||||||||| | ||||||| || || ||| | ||||||  |||||||| |||||||||||||    
T  680583 aaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaaca 680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 36415677 - 36415744
Alignment:
Q  204 atgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    |||| |||||||| |||||| ||||||||  |||||||||||||| ||| | ||||||| ||||||||    
T  36415677 atgtgcataagttgttttcatcttattttcgtaagttctacatgatagcttatgaaaacagcttatag 36415744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 44443394 - 44443359
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttt 232  Q
    |||||||||||||||||||| |||||||||||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttatttt 44443359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 26626938 - 26626848
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaacttt 295  Q
    |||||||||  | ||||||| ||||||| ||||||||| || || ||| | ||||||| |||| ||| |||||||||||||  ||||||||    
T  26626938 tgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagcttctagcttatacgaaaacaatttaacttt 26626848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 7928304 - 7928341
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttct 242  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  7928304 tgttcataagttgttttcagcttattttcataagttct 7928341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 12313126 - 12313211
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    ||||||||||| ||||  ||||||| ||| |||||  |||| |||||||  |||||||||||||  ||||| |||||||| |||||    
T  12313126 cataagcacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataag 12313211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 33319830 - 33319907
Alignment:
Q  218 ttttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaacttt 295  Q
    ||||||||||||||| ||||||||| || || ||  | ||||||| | ||||||| ||||| ||||||| ||||||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtttatagtatatacaaaaacagtttaacttt 33319907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 35378537 - 35378570
Alignment:
Q  205 tgttcataagttattttcagcttatttttataag 238  Q
    |||||||||||||||||||||||||||| |||||    
T  35378537 tgttcataagttattttcagcttattttcataag 35378570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 11513958 - 11513870
Alignment:
Q  210 ataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    ||||| ||||||||||||||||  | ||||||| ||||| ||| | |||||||  ||||||| ||||| |||||||  || ||||||||    
T  11513958 ataagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 11513870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 18179191 - 18179323
Alignment:
Q  151 tacataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgaca 250  Q
    ||||||||||||| | ||  ||||||| || ||||||  ||||  |||| || |||| ||| || |||||||||||||||||  |||||||| || || |    
T  18179191 tacataagcacttgtaagtttgtttggaagtgtttatgaaaacatcttaagacatgtccattagctattttcagcttattttcgtaagttctccaggata 18179290  T
Q  251 gcgtttgaaaactgcttatagtttatacgaaaa 283  Q
    || | ||||| | |||||||| ||||| |||||    
T  18179291 gcttatgaaagcagcttatagcttatatgaaaa 18179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 28039337 - 28039417
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaaca 285  Q
    |||||||||| | ||||||||||||||  |||| || | || || ||| | |||||| ||||||||||||||| |||||||    
T  28039337 tgttcataagctgttttcagcttatttccataacttttccaagaaagcttatgaaaattgcttatagtttatatgaaaaca 28039417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 43984998 - 43985086
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaa 283  Q
    |||||| | |||||||| |  ||||||||||||||||| ||||| ||| || || ||| | |||||||  |||||| ||||||||||||    
T  43984998 gcttataatatgttcattatctattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatacgaaaa 43985086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 44439426 - 44439478
Alignment:
Q  266 ttatagtttatacgaaaacagattaactttattatttattttgttattgaaat 318  Q
    |||||| |||||| ||||||| ||||||||||| | ||||||||||| |||||    
T  44439426 ttatagcttatacaaaaacagtttaactttattttatattttgttatggaaat 44439478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 29417700 - 29417787
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaa 283  Q
    |||||||||| |||||||| |||||| ||||||||  ||||||||||  |||| ||  | |||||||  |||||||||||||||||||    
T  29417700 cttatgaaattttcataagctatttttagcttattcatataagttctcaatgatagtttatgaaaacatcttatagtttatacgaaaa 29417787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 7646305 - 7646139
Alignment:
Q  171 tgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttata 270  Q
    ||||||| ||| |||||  |||| |||||||| ||||| || || ||||||||||||||||  ||||| ||| |  | |||| | |||| || | |||||    
T  7646305 tgtttgggagaatttatgaaaactgcttatgacatgttgatcagctattttcagcttatttccataagctctcctggtcagcttatgaagacagtttata 7646206  T
Q  271 gtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccactt 337  Q
    | |||||| ||||||  ||||||||||| |   |||| |||| ||||| || |||||||||||||||    
T  7646205 gattatacaaaaacaatttaactttattttaccttttcttatagaaatagcttatacataaccactt 7646139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 30389170 - 30389127
Alignment:
Q  199 atgaaatgttcataagttattttcagcttatttttataagttct 242  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||    
T  30389170 atgacatgttcataagttgttttcagcttattttcataagttct 30389127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 11569410 - 11569527
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagc 252  Q
    ||||| ||||| |||| ||||||   |||| ||||  |||| |||||||| |||| |||||||| ||||||||||||||| | ||  ||| ||||| |||    
T  11569410 cataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagc 11569509  T
Q  253 gtttgaaaactgcttata 270  Q
     | ||||||| |||||||    
T  11569510 ttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 2594993 - 2595037
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttttataagtt 240  Q
    ||||||| ||||||||||||| ||||||||||||| | |||||||    
T  2594993 cttatgacatgttcataagttgttttcagcttattctcataagtt 2595037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 11118993 - 11119037
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttttataagtt 240  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||    
T  11118993 cttatgacatgttcataagctgttttcagcatatttttataagtt 11119037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 27028894 - 27028830
Alignment:
Q  207 ttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatag 271  Q
    |||||||| ||||||||||||||||| ||||| ||| || || ||| | ||||||| ||||||||    
T  27028894 ttcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatag 27028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 42215296 - 42215404
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagatt 289  Q
    |||| ||||||||  |||||||||| | ||||||||||||||  ||||| ||| || || ||| | ||||||  | |||||| |||||| ||||||| ||    
T  42215296 aaacagcttatgacttgttcataagctgttttcagcttatttacataagctctccaggatagcatatgaaaataggttatagattatacaaaaacagttt 42215395  T
Q  290 aactttatt 298  Q
     ||||||||    
T  42215396 gactttatt 42215404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 9527146 - 9527229
Alignment:
Q  256 tgaaaactgcttatagtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccacttgt 339  Q
    |||||||  ||||||||||||| |||||||| || |||||||||| | ||||||||| || || ||||||| |||| |||||||    
T  9527146 tgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgt 9527229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 2825235 - 2825308
Alignment:
Q  204 atgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttata 277  Q
    ||||||||||||||||||||||||||||  |||||||||  | || ||| | |||||||  |||||||||||||    
T  2825235 atgttcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 33894745 - 33894666
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttattt 231  Q
    |||||||||||| |||| |||||||  |||| ||||  |||| || ||||| |||| |||||||| ||||||||||||||    
T  33894745 acataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttattt 33894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 42839932 - 42840027
Alignment:
Q  153 cataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatga 248  Q
    |||||||||||||||| || ||||| ||||||||   |||| | |||||| || |||||||| |  |||||||||| || |||||||||| |||||    
T  42839932 cataagcacttttgagactatttgggagagtttaccgaaacagtttatgacattttcataagatcatttcagcttaattgtataagttcttcatga 42840027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 28727753 - 28727803
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagtt 240  Q
    ||||||||||||| |||||| || ||| |||||||||||||| ||||||||    
T  28727753 aaacggcttatgacatgttcgtatgttgttttcagcttatttctataagtt 28727803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 39345581 - 39345471
Alignment:
Q  160 acttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaa 259  Q
    |||| |||| ||||||||||||||| ||  |||| | |||||| |||| ||||||||  |||||||||||||  ||||| ||  || || ||| ||||||    
T  39345581 acttgtgagactgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagcttttgaa 39345482  T
Q  260 aactgcttata 270  Q
    ||| |||||||    
T  39345481 aacagcttata 39345471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 30535637 - 30535548
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaaca 285  Q
    ||||||| |||||| |||| | ||||||| ||||||| ||| |||||| | || ||| | || |||| |||||||| |||||||||||||    
T  30535637 cttatgatatgttcgtaagctgttttcaggttattttcatatgttctataagatagcttatggaaacagcttatagattatacgaaaaca 30535548  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 9038197 - 9038134
Alignment:
Q  184 ttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatga 248  Q
    ||||| |||| |||||||| |||||||||| || ||||||||||||||| | ||||||| |||||    
T  9038197 ttataaaaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatga 9038134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 12242362 - 12242278
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttata 236  Q
    |||||| | ||| |||| |||||||  |||| |||| |||||||||||||| |||   ||||||| |||||||||||||| ||||    
T  12242362 acataacctcttgtgagactgtttgagagagcttatgcaaacggcttatgatatgcctataagttgttttcagcttatttctata 12242278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 12834916 - 12834992
Alignment:
Q  154 ataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatt 230  Q
    |||||||||| |||| ||| ||||||||| ||||  |||| |||||||| |||| |||||  | |||||||||||||    
T  12834916 ataagcacttctgagactgattggtagagattatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 21367732 - 21367639
Alignment:
Q  205 tgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttatt 298  Q
    |||||| ||| | ||||||||||||||| ||||||||| || || ||| | |||||||  ||||||  |||||||||||||  |||||||||||    
T  21367732 tgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatacattatacgaaaacaatttaactttatt 21367639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 52619076 - 52618975
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaacttta 296  Q
    |||||| ||||||||||| |||||||| |||||||| | ||| ||| || || ||| | ||||||| |||||||  ||||| |||||||  |||||||||    
T  52619076 ttatgacatgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaacttta 52618977  T
Q  297 tt 298  Q
    ||    
T  52618976 tt 52618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 337
Target Start/End: Complemental strand, 27792977 - 27792805
Alignment:
Q  165 tgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactg 264  Q
    |||| ||||||| ||||||||||  |||  |||| ||| |  || ||||||| |||||||||||||| |||||| ||||||||| ||  | |||||||      
T  27792977 tgagactgtttgatagagtttatggaaatagcttttgacaaatttataagttgttttcagcttatttctataagctctacatgatagtttatgaaaacaa 27792878  T
Q  265 cttatagtttatacgaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccactt 337  Q
    |||  || ||||| ||||| || || || ||||| | | ||||||| ||||||| || ||||||||| |||||    
T  27792877 cttgcagcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcactt 27792805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 33883748 - 33883792
Alignment:
Q  198 tatgaaatgttcataagttattttcagcttatttttataagttct 242  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcataagttct 33883792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 54837004 - 54837072
Alignment:
Q  170 ctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttttataag 238  Q
    |||||||| ||| |||||  |||| |||||||| |||||||||| || ||||| |||||||||||||||    
T  54837004 ctgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataag 54837072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 24785280 - 24785177
Alignment:
Q  195 gcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactt 294  Q
    |||||||| ||||||||||||| |||| |||||||||  ||||| |||  | || ||| | |||||||   |||||| |||||| |||||||||| ||||    
T  24785280 gcttatgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaaacacgttatagattatacaaaaacagattgactt 24785181  T
Q  295 tatt 298  Q
    ||||    
T  24785180 tatt 24785177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 33405162 - 33405265
Alignment:
Q  196 cttatgaaatgttcataagttattttcagcttattttt-ataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactt 294  Q
    ||||||| ||||||||||  | ||||| |||||  ||| ||||||||| || || ||| | ||||||| |||||||| ||||| ||||||| ||||||||    
T  33405162 cttatgatatgttcataaactgttttcggcttaactttcataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaaattaactt 33405261  T
Q  295 tatt 298  Q
    ||||    
T  33405262 tatt 33405265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 30443999 - 30443921
Alignment:
Q  165 tgagcctgtttggtagagtttatacaaacggcttatga-aatgttcataagttattttcagcttatttttataagttct 242  Q
    |||| ||||||||||||| ||||  |||| |||||||| ||| |||| ||| | ||||||||||||||| |||||||||    
T  30443999 tgagactgtttggtagagcttatgaaaacagcttatgacaattttcacaagcttttttcagcttattttcataagttct 30443921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 31055119 - 31055061
Alignment:
Q  32 ccaaaaggggtggcatctatactcaatcaaaccagcagcatttataggaatctgaaagt 90  Q
    |||| ||||||| || ||||||||||||||||||| | |||||||||| ||||| ||||    
T  31055119 ccaataggggtgacacctatactcaatcaaaccagaaccatttataggtatctgcaagt 31055061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 32095199 - 32095309
Alignment:
Q  208 tcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttattatttatttt 307  Q
    ||||||| || ||| ||||||||||||| |||| | || || ||  | ||||||| ||||||||||||||| ||||||  ||||||| ||| | | ||||    
T  32095199 tcataagctaattttagcttatttttattagtttttcaagatagattatgaaaacggcttatagtttatacaaaaacaatttaacttaattttatctttt 32095298  T
Q  308 gttattgaaat 318  Q
    ||||| |||||    
T  32095299 gttatagaaat 32095309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 41028930 - 41028988
Alignment:
Q  279 gaaaacagattaactttattatttattttgttattgaaattgcgtatacataaccactt 337  Q
    ||||||||||| |||||||| ||| ||||||||| ||||| || ||||||||| |||||    
T  41028930 gaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcactt 41028988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41057220 - 41057182
Alignment:
Q  204 atgttcataagttattttcagcttatttttataagttct 242  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  41057220 atgttcataagttattttcagcttattatcataagttct 41057182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 29637596 - 29637632
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttattttt 233  Q
    |||||| |||||||||||||||||| |||||||||||    
T  29637596 ttatgagatgttcataagttatttttagcttattttt 29637632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 45432936 - 45432984
Alignment:
Q  197 ttatgaaatgttcataagttattttcagcttatttttataagttctaca 245  Q
    |||||| ||||||||||||| ||||||||||||||  ||||| ||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctaca 45432984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 30066756 - 30066851
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaaca 285  Q
    |||| |||||| | ||||||||||  | |||||||||| |||||||||| ||| || || ||| | ||| ||| ||||| ||||||||||||||||    
T  30066756 aaacagcttataatatgttcataatctgttttcagcttgtttttataagctctccaagatagcttatgagaacagcttacagtttatacgaaaaca 30066851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 29263450 - 29263409
Alignment:
Q  190 aaacggcttatgaaatgttcataagttattttcagcttattt 231  Q
    |||| |||||||| ||||||||||||| ||||||||||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttattt 29263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 29467598 - 29467655
Alignment:
Q  174 ttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttattt 231  Q
    |||||| || ||||| ||||||||||||| |||| |||||| | ||||||||||||||    
T  29467598 ttggtaaagcttatagaaacggcttatgacatgtccataagctgttttcagcttattt 29467655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 2996691 - 2996611
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttatttt 232  Q
    ||||||||||||||||| |||||||  |||| ||||  ||||  ||||||| |||| |||||| | |||||| ||||||||    
T  2996691 acataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttatttt 2996611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 27405868 - 27405804
Alignment:
Q  211 taagttattttcagcttatttttataagttctacatgacagcgt-ttgaaaactgcttatagttt 274  Q
    |||| |||||||||||||||| |||||||| | ||||| ||| | |||||||| |||||||||||    
T  27405868 taagctattttcagcttatttatataagttttccatgatagcttattgaaaacagcttatagttt 27405804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 28300297 - 28300397
Alignment:
Q  198 tatgaaatgttcataagttattttcagcttatttttataagttctacatgacagcgtttgaaaactgcttatagtttatacgaaaacagattaactttat 297  Q
    ||||| |||||| |||||| |||||| |||||||| ||||| ||| || || ||| | ||||||  | |||||| |||||| ||||||  ||||||||||    
T  28300297 tatgacatgttcttaagttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaatttaactttat 28300396  T
Q  298 t 298  Q
    |    
T  28300397 t 28300397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 43824382 - 43824322
Alignment:
Q  171 tgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagcttattt 231  Q
    ||||||| ||| | |||| ||| ||||||||  ||||||||||||| ||||||||||||||    
T  43824382 tgtttgggagaatatataaaaatggcttatggcatgttcataagttgttttcagcttattt 43824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 54277275 - 54277351
Alignment:
Q  152 acataagcacttttgagcctgtttggtagagtttatacaaacggcttatgaaatgttcataagttattttcagctta 228  Q
    |||||| ||||| |||| ||||| |  |||| ||| | |||| |||||| | |||||||||||||||||||||||||    
T  54277275 acataaacacttatgagactgttagcgagagcttacagaaacagcttatcacatgttcataagttattttcagctta 54277351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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