View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12574_high_6 (Length: 231)

Name: NF12574_high_6
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12574_high_6
NF12574_high_6
[»] chr3 (20 HSPs)
chr3 (16-217)||(22367346-22367547)
chr3 (16-216)||(22467373-22467573)
chr3 (16-197)||(22357424-22357605)
chr3 (44-217)||(22430620-22430793)
chr3 (17-217)||(22436054-22436254)
chr3 (34-217)||(22634946-22635129)
chr3 (16-202)||(22442164-22442350)
chr3 (32-209)||(22353250-22353427)
chr3 (16-201)||(22629865-22630048)
chr3 (16-202)||(37930281-37930468)
chr3 (27-201)||(22457922-22458096)
chr3 (27-201)||(22480903-22481077)
chr3 (139-217)||(22620429-22620507)
chr3 (139-198)||(30988838-30988897)
chr3 (139-198)||(22647717-22647776)
chr3 (152-213)||(21931280-21931341)
chr3 (139-198)||(21946498-21946557)
chr3 (139-212)||(22053567-22053639)
chr3 (139-212)||(22105569-22105641)
chr3 (161-217)||(22656621-22656677)
[»] chr1 (4 HSPs)
chr1 (139-198)||(2305019-2305078)
chr1 (139-198)||(34976245-34976304)
chr1 (139-198)||(34983356-34983415)
chr1 (139-198)||(34990091-34990150)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 22367346 - 22367547
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctact 115  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22367346 caattgtctgtcctcggtaatactcttgcaaaagcttaaatcctcatgtttattaaggatcattgcatgcactagatcatgaacacggcaactgtctact 22367445  T
Q  116 cttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttctt 215  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22367446 cttccatcaatagtgatcccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttctt 22367545  T
Q  216 ct 217  Q
    ||    
T  22367546 ct 22367547  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 22467373 - 22467573
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctact 115  Q
    |||||||||| |||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  22467373 caattgtttgtcctcagtaatattcttgcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttact 22467472  T
Q  116 cttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttctt 215  Q
    |||||||||||| | ||   | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||| ||||    
T  22467473 cttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtctt 22467572  T
Q  216 c 216  Q
    |    
T  22467573 c 22467573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 22357424 - 22357605
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctact 115  Q
    ||||||||||||||| |||||| ||| |||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||| ||||  | ||||    
T  22357424 caattgtttgccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacgacaacgttttact 22357523  T
Q  116 cttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttcca 197  Q
    |||||||||||| ||||   |||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||    
T  22357524 cttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacctcttcca 22357605  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 22430620 - 22430793
Alignment:
Q  44 caaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatcccatctactt 143  Q
    ||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||| |||||   |||||||||||||||| | ||   ||||||||    
T  22430620 caaaagcttaaatcctcatattttttaaggatcatttcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctactt 22430719  T
Q  144 gcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttct 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||| ||||    
T  22430720 gcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtccttcccgttttttct 22430793  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 22436054 - 22436254
Alignment:
Q  17 aattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactc 116  Q
    ||||| ||| |||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||| | |||||    
T  22436054 aattgattgtcctcagtaatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactc 22436153  T
Q  117 ttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttc 216  Q
    ||||||||||| | ||   | |||| |||||||||||||||| || |||||||||||||| ||||| |||||  |||||||||||| ||||||| |||||    
T  22436154 ttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttc 22436253  T
Q  217 t 217  Q
    |    
T  22436254 t 22436254  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 22634946 - 22635129
Alignment:
Q  34 aatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtgatc 133  Q
    |||| |||||||||| |||||||||| |  ||| |||||||||||| ||||||||||||||||||| |||||||| | |||||||||||||||| |  |     
T  22634946 aatattcttgcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagtt 22635045  T
Q  134 ccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttct 217  Q
      | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  22635046 gaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttct 22635129  T

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Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 22442164 - 22442350
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctact 115  Q
    ||||||||| ||||| |||||| ||| |||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||| | ||||    
T  22442164 caattgttttccctcagtaatattctcgcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacggcaactttttact 22442263  T
Q  116 cttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtc 202  Q
    |||||||||||| || |   | ||||||||||||||||||||  ||| ||| || |||||| |||||||||||||| ||||||||||    
T  22442264 cttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaaccttttccaatgtc 22442350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 22353250 - 22353427
Alignment:
Q  32 gtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaatagtga 131  Q
    |||||| |||||||||| ||||||||||||| |||   |||||||||| ||||||||||||| |||||||| ||||| | |||||||||||||||| |||    
T  22353250 gtaatattcttgcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactga 22353349  T
Q  132 tcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccc 209  Q
        ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |||| ||||||    
T  22353350 ctgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttccattgtccttcccc 22353427  T

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Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 22629865 - 22630048
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctact 115  Q
    |||||| ||| ||||  ||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| | ||||    
T  22629865 caattgcttgtcctcaataatattcttgcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttact 22629964  T
Q  116 cttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgt 201  Q
    |||||||  ||| |  |   | |||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||    
T  22629965 cttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgt 22630048  T

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Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 37930281 - 37930468
Alignment:
Q  16 caattgtttgccctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaa-ggatcattgcatgcactagatcatgaacacggcaactgtctac 114  Q
    ||||| ||||||||  |||||| ||| |||||| |||||||||  |  ||| |||| |||||||| |||||||||||||||||||||| ||||| | |||    
T  37930281 caattttttgccctaagtaatattctcgcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttac 37930380  T
Q  115 tcttccatcaatagtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtc 202  Q
    |||||||||||||  | |   | ||||||||||||||||||||  ||| |||||| |||||| |||||| ||||||| ||||||||||    
T  37930381 tcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgtc 37930468  T

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Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 22457922 - 22458096
Alignment:
Q  27 cctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaat 126  Q
    ||||| ||||| |||||||||| ||||| || |||  ||| |||||||||| ||||||||| |||||||||||||  ||||| | | |||||||||||||    
T  22457922 cctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaat 22458021  T
Q  127 agtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgt 201  Q
    | | ||   | ||||||||||||||| ||||  |||||| ||| |||||| ||| |||||||| |||||||||||    
T  22458022 actaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 22458096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 22480903 - 22481077
Alignment:
Q  27 cctcggtaatactcttgcaaaagcttaaatcctcatgtttatcaaggatcattgcatgcactagatcatgaacacggcaactgtctactcttccatcaat 126  Q
    ||||| ||||| |||||||||| ||||| || |||  ||| |||||||||| ||||||||| |||||||||||||  ||||| | | |||||||||||||    
T  22480903 cctcgctaatattcttgcaaaaacttaattcttcacatttttcaaggatcaatgcatgcaccagatcatgaacacaacaactttttgctcttccatcaat 22481002  T
Q  127 agtgatcccatctacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgt 201  Q
    | | ||   | ||||||||||||||| ||||  |||||| ||| |||||| ||| |||||||| |||||||||||    
T  22481003 actaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 22481077  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 22620429 - 22620507
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttct 217  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||| ||  | ||||||||||||    
T  22620429 tacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttct 22620507  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 30988838 - 30988897
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||    
T  30988838 tacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaa 30988897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 22647717 - 22647776
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    |||||| |||||||||||||||||||||||  |||||| || ||||||||| ||||||||    
T  22647717 tacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 21931341 - 21931280
Alignment:
Q  152 cttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttc 213  Q
    |||||||||||||||||| |||||| ||||||||| || |||||||| ||||| ||| ||||    
T  21931341 cttctatggatcaactctgttaaatatccttctgccacttcttccaaagtcatccccttttc 21931280  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 21946557 - 21946498
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    |||||| ||||  |||||||||||||||||| |||||| ||||||||| || ||||||||    
T  21946557 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcttccaa 21946498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 22053639 - 22053567
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattccccttt 212  Q
    |||||| ||||  ||||||||||||||||||  ||||| ||||||||| || |||||||| ||| |||||||||    
T  22053639 tacttgaaccaggcttctatggatcaactctgataaatatccttctgccacttcttccaaagtc-ttccccttt 22053567  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 22105641 - 22105569
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaatgtcattccccttt 212  Q
    |||||| ||||  |||||||||||||||||| |||||| ||||||||| || || ||||| ||| |||||||||    
T  22105641 tacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcgtccaaagtc-ttccccttt 22105569  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 22656621 - 22656677
Alignment:
Q  161 atcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttct 217  Q
    ||||||||| |||||| |||||||||||| |||||||| ||  | ||||||||||||    
T  22656621 atcaactctgttaaatatccttctgcaacttcttccaaagttttccccctttcttct 22656677  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 2305019 - 2305078
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    ||||||||||||||||| | | |||||||||  ||||| |||||||||||| ||||||||    
T  2305019 tacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaa 2305078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 34976304 - 34976245
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    ||||||||||||||||| | | ||||||||| |||||| ||||| |||||| ||||||||    
T  34976304 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 34983415 - 34983356
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    ||||||||||||||||| | | ||||||||| |||||| ||||| |||||| ||||||||    
T  34983415 tacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34983356  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 34990150 - 34990091
Alignment:
Q  139 tacttgcaccaaacttctatggatcaactctattaaatgtccttctgcaacctcttccaa 198  Q
    ||||||||||||||||||| | ||||||||| |||||| || |||| |||| ||||||||    
T  34990150 tacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaa 34990091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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