View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12574_low_2 (Length: 384)
Name: NF12574_low_2
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12574_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 34743537 - 34743181
Alignment:
| Q |
23 |
cttttggtcccaaaagtattgtccatctcatgaatatgataacacagctcgctgctgtagttgtgaaagattagaggtactaatttaacttccacttcaa |
122 |
Q |
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| T |
34743537 |
cttttggtcccaaaagtattgtccatctcatgaatatgataacacagctcgctgctgtagttgtgaaagattagaggtactaatttaacttccacttcaa |
34743438 |
T |
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| Q |
123 |
attatttcataattcatatttccaaaacaagctaatgaacaactttaatctgaatcctattttgttgacacttttatcttcctcttgaagccacggaata |
222 |
Q |
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| T |
34743437 |
attatttcataattcatatttccaaaacaagctaatgaacaactttaatctggatcctattttgttgacgcttttatcttcctcttgaagccacggaata |
34743338 |
T |
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| Q |
223 |
cgaaatactatagactcgaggacgggcgaagcttgtgcttagagtgcatggaatctgctataatggatactggtgactgtcagcctctataccattcaat |
322 |
Q |
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| T |
34743337 |
cgaaatactatagactcgaggacgggcgaagcttgtgcttagagtgcatggaatctgctataatggatactggtgactgtcagcctctataccattcaat |
34743238 |
T |
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| Q |
323 |
cagagattattatgaaggaatgcatatgagaattgatcagcaagttcctatgcttct |
379 |
Q |
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| T |
34743237 |
cagagattattatgaaggaatgcatatgagaattgatcagcaagttcctatgcttct |
34743181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 31055339 - 31055463
Alignment:
| Q |
255 |
ttgtgcttagagtgcatggaatctgctataatggatactggtgactgtcagcctctataccattcaatcagagattattatgaaggaatgcatatgagaa |
354 |
Q |
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| T |
31055339 |
ttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaaggaatgaatatgagaa |
31055438 |
T |
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| Q |
355 |
ttgatcagcaagttcctatgcttct |
379 |
Q |
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| T |
31055439 |
tcgatcaacaaatccctatgcttct |
31055463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 31055122 - 31055196
Alignment:
| Q |
32 |
ccaaaagtattgtccatctcatgaatatgataacacagctcgctgctgtagttgtgaaagattagaggtactaat |
106 |
Q |
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|||||| || ||||| ||||||||| ||||||| ||| ||||||| ||||| ||||||||||||||||||||||| |
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| T |
31055122 |
ccaaaaatactgtccgtctcatgaacatgataatacatctcgctgttgtagctgtgaaagattagaggtactaat |
31055196 |
T |
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