View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12574_low_3 (Length: 318)
Name: NF12574_low_3
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12574_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 3604562 - 3604856
Alignment:
| Q |
13 |
caattatgtcatctatttcgccagatacaagacaccagttcatgtttcttaaacgcaagaagaatctccctcaatccaaagcgacccctagtgattacgc |
112 |
Q |
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| T |
3604562 |
caattatgtcatctatttcgccagatacaagacaccagttcatgtttcttaaacgcaagaagaatctccctcaatccaaagcgacccctagtgattacgc |
3604661 |
T |
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| Q |
113 |
gcaggaaattccctagcaataatgaatccaagcaattcagcctcaaaaatatatatgtcccccaaattagaagagaatatgccattataaatgaggaacc |
212 |
Q |
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| T |
3604662 |
gcaggaaattccctagcaataatgaatccaagcaattcagcctcaaaaatatatatgtcccccaaattagaagagaatatgccattataaatgaggaacc |
3604761 |
T |
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| Q |
213 |
cattccacgaatgatccgaaagaagatcttcattgagaacccagagttggaggaccctgaaaccgggttttaattactgaacgacttgccttctt |
307 |
Q |
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| T |
3604762 |
cattccacgaatgatccaaaagaagatcttcattgagaacccagagttggaggaccttgaaaccgggatttaattacttaacgacttgacttctt |
3604856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 55989998 - 55990238
Alignment:
| Q |
70 |
agaagaatctccctcaatccaaagcgacccctagtgatt----acgcgcaggaaattccctagcaataatgaatccaagcaattcagcctcaaaaatata |
165 |
Q |
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| T |
55989998 |
agaagaatctccctcaatccaaaacgaccca-agtgattgactacgtgcaacaaattccctagcaataatgaatccaagcaagtcagcctaaaaaatata |
55990096 |
T |
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| Q |
166 |
tatgtcccccaaattagaagagaatatgccattataaatgaggaacccattccacgaatgatccgaaagaagatcttcattgagaacccagagttggagg |
265 |
Q |
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| T |
55990097 |
tatgtcccccaatatagaagagaatatgccaaaataaatgaggaactcattccatgattgttcgaaaagaagatcttcattaagaacccggagttggagg |
55990196 |
T |
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| Q |
266 |
accctgaaaccgggttttaattactgaacgacttgccttctt |
307 |
Q |
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| T |
55990197 |
accctgagaccgggttttaattattgagcgacttgccttctt |
55990238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 15560941 - 15560884
Alignment:
| Q |
70 |
agaagaatctccctcaatccaaagcgacccctagtgattacgcgcaggaaattcccta |
127 |
Q |
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| T |
15560941 |
agaagaatctccctcaatccaaagctaccccccgtgtttactcgcaacaaattcccta |
15560884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 27909273 - 27909234
Alignment:
| Q |
70 |
agaagaatctccctcaatccaaagcgacccctagtgattac |
110 |
Q |
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| T |
27909273 |
agaagaatctcccttaatccaaagcgacccc-agtgattac |
27909234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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