View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12574_low_4 (Length: 294)
Name: NF12574_low_4
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12574_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 19451672 - 19451940
Alignment:
| Q |
11 |
cacagacactcccgtttgactcaaaaacttgctttgccatttcttcacttagctcaatacttgcatgttgcttataacaagcatctaaaagactcctcca |
110 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19451672 |
cacaaacactcccgtttgactcaaaaatttgctttgccatttcttcacttagctcaacacttgcatgttgcttataacaagcatctaaaagactcctcca |
19451771 |
T |
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| Q |
111 |
aattacagcatctggtttaatcggcatttctgaaatgacattcagagcggcttgaatatgtccagctctagcgtaaagatcaacaagacacccaaaatgc |
210 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
19451772 |
aattacagcatctggtttaatcggcatttccgaaaccacattgagagcctcttggatatgtccagctctagcataaagatcaacaagacatccataatgc |
19451871 |
T |
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| Q |
211 |
accaaacttggttcaacattgtattccttagtcatcatttcaaaatacatcaacccttcatcaaccatt |
279 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19451872 |
accaaacttggttcaacattgtactctttagtcatcatttcaaaatacattaacccttcatcaaccatt |
19451940 |
T |
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