View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12574_low_5 (Length: 250)
Name: NF12574_low_5
Description: NF12574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12574_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 36526411 - 36526598
Alignment:
| Q |
51 |
atatatataaaagttcaaatcttccattccttcttccttatttattcgtttcaacgttaacgtatgatgcaagtaaacaaagactaaacttcgggcatta |
150 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526411 |
atatatatataagttcaaatcttccaatccttcttccttatttattcgtttcaacgttaacgtatgatgcaagtaaacaaagactaaacttcgggcatta |
36526510 |
T |
|
| Q |
151 |
tttttcttttagttagctttgtgctttaataaagctacttttcttgccagttgccaccaacaagtctgtatcaacaaacagtgaacga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526511 |
tttttcttttagttagctttgtgctttaataaagctacttttcttgccagttgccaccaacaagtctgtatcaacaaacagtgaacga |
36526598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University