View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_high_15 (Length: 242)
Name: NF12575_high_15
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18031345 - 18031115
Alignment:
| Q |
1 |
tgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatc |
100 |
Q |
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| T |
18031345 |
tgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatc |
18031246 |
T |
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| Q |
101 |
taacaactactcaaagcctggtacagctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtgga---tga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18031245 |
taacaactactcaaagcctggtacagctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtggatattga |
18031146 |
T |
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| Q |
198 |
caagattgaggaaatagacgatggtgataat |
228 |
Q |
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| T |
18031145 |
caagattgaggaaatagacaatggtgataat |
18031115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 18081142 - 18080972
Alignment:
| Q |
24 |
taaatgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactcaaagcctggta |
123 |
Q |
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|||||||||||| ||||| |||| || ||| | |||| ||| ||||||| ||||| ||||||||||||||||| || |||| ||| ||||||| | |
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| T |
18081142 |
taaatgcagcctaaatcttcgcaatctgaagaacatgaccctaaaatcatgtccaacgttggtttctgtttttgacctgtcaacatctcgaagcctgctg |
18081043 |
T |
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| Q |
124 |
cagctggagagcttggaaataagtcaatgtgagaaattagaaaacatatttactgatgaaaggagagtgga |
194 |
Q |
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| T |
18081042 |
ctgttggagagcttggaaataattgattgcaaaatattggaaaacataattacatgtgaaaggagagtgga |
18080972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 26117164 - 26117006
Alignment:
| Q |
13 |
caaagcctgtttaaatgcagcctgaatctctgcaagctaaaggaactgactctagaatcatgcccaacattggtttctgtttttgatctaacaactactc |
112 |
Q |
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|||||| |||||||||||||||| |||||| |||| |||||| |||| ||| ||||||| ||| |||||||||||||||||| || | ||| ||| |
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| T |
26117164 |
caaagcttgtttaaatgcagcctaaatctcagcaatctaaagaccgtgacactaatatcatgctcaagattggtttctgtttttgaactgtccacttctc |
26117065 |
T |
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| Q |
113 |
aaagcctggtacagctggagagcttggaaataagtcaatgtgagaaattagaaaacata |
171 |
Q |
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| T |
26117064 |
aaagcttgccgctgttggaggaattggaaataattgattgtgagaaattggaaaacata |
26117006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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