View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_high_4 (Length: 399)
Name: NF12575_high_4
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 130 - 393
Target Start/End: Complemental strand, 9692622 - 9692360
Alignment:
| Q |
130 |
tcattgttgccggtcacaatcatgtcaccaacatatttagcttacaattagtttgtgcttatttgttgagtttttgcagtataagatatgcacatgtaca |
229 |
Q |
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| T |
9692622 |
tcattgttgccggtcacaatcacgtcaccaacatatt-agcttacaattagtttgtgcttatttgttgagtttttgcagtataagatatgcacatgtaca |
9692524 |
T |
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| Q |
230 |
cattttacaaaaccttgttgaagaaggaacccatcgatcttcttgttccatgctctaggtgtctgatatgagccatacagagatttcttcaatttgtaca |
329 |
Q |
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| T |
9692523 |
cattttacaaaaccttgttgaagaaggaaccaatcgatcttcttgttccatgctctaggtgtctgatatgagccatacagagatttcttcaatttgtaca |
9692424 |
T |
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| Q |
330 |
agcaattttccttgcctttttcatcaaaacatgatggttgagtcacatatacttcttctctctc |
393 |
Q |
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| T |
9692423 |
agcaattttccttgcctttttcatcaaaacatgatggttgagtcacatatacttcttctatctc |
9692360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9692697 - 9692620
Alignment:
| Q |
1 |
cttccatgatgaactagaaatccttgtgcttttatcttaaattccatttctatgaaataagataagataccaagatca |
78 |
Q |
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| T |
9692697 |
cttccatgatgaactagaaatccttgtgctcttatcttaaattccatttctatgaaataagataagataccaagatca |
9692620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 29997360 - 29997244
Alignment:
| Q |
177 |
ttagtttgtgcttatttgttgagtttttgcagtataagatatgcacatgtacacattttacaaaaccttgttgaagaaggaacccatcgatcttcttgtt |
276 |
Q |
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||||||| | ||||||||| | |||| ||| ||||| | ||||| ||| ||||||||| ||||| ||||||||||||||||||||||| || |||||||| |
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| T |
29997360 |
ttagttttttcttatttgtagtgtttatgcggtatatgttatgctcatttacacatttcacaaatccttgttgaagaaggaacccatctattttcttgtt |
29997261 |
T |
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| Q |
277 |
ccatgctctaggtgtct |
293 |
Q |
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||| ||||||| ||||| |
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| T |
29997260 |
ccaagctctagctgtct |
29997244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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