View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_10 (Length: 277)
Name: NF12575_low_10
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 17066054 - 17065793
Alignment:
| Q |
16 |
atgaatatagctaggactattgctaaagaatgtggtatactcaccaataatggtttaaccattgaaggacaagaatttcggaacttgtctacaatgaata |
115 |
Q |
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| T |
17066054 |
atgaatatagctaggactattgctaaagaatgtggtatactcaccaataatggtttaaccattgaaggacaagaatttcggaacttgtctacaatgcata |
17065955 |
T |
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| Q |
116 |
tgaaggataccataccacaaattcaggttctaatgtcattgtttgttctgtgaattttacctctatttgaaatgtttgtttctcttacatgattaatatt |
215 |
Q |
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| T |
17065954 |
tgaaggttaccataccacaaattcaggttctaatgtcattgtttgttctgtgaattttacctctatttgaaatgtttgtttctcttacatgcttaatatt |
17065855 |
T |
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| Q |
216 |
gatgcaggtgatggcgcgattcctaccacatgacaaacactccattgtagcttctctgaagg |
277 |
Q |
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| T |
17065854 |
gatgcaggtgatggcgcgattcctaccacatgacaaacactccattgtagcttctctgaagg |
17065793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 17582304 - 17582565
Alignment:
| Q |
16 |
atgaatatagctaggactattgctaaagaatgtggtatactcaccaataatggtttaaccattgaaggacaagaatttcggaacttgtctacaatgaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17582304 |
atgaatatagctaggactattgctaaagaatgtggtatactcaccaataatggtttaaccattgaaggacaagaatttcggaacttgtctacaatgcata |
17582403 |
T |
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| Q |
116 |
tgaaggataccataccacaaattcaggttctaatgtcattgtttgttctgtgaattttacctctatttgaaatgtttgtttctcttacatgattaatatt |
215 |
Q |
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| T |
17582404 |
tgaaggttaccataccacaaattcaggttctaatgtcattgtttgttctgtgaattttacctctatttgaaatgtttgtttctcttacatgcttaatatt |
17582503 |
T |
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| Q |
216 |
gatgcaggtgatggcgcgattcctaccacatgacaaacactccattgtagcttctctgaagg |
277 |
Q |
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| T |
17582504 |
gatgcaggtgatggcgcgattcctaccacatgacaaacactccattgtagcttctctgaagg |
17582565 |
T |
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