View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_11 (Length: 275)
Name: NF12575_low_11
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 44988821 - 44989071
Alignment:
| Q |
20 |
tattatccgcttggcgttttttagtgacagtgaactgtcgctaacacgtataagatcggttcaataattttttaagttgaaccgatcttataagtgtcag |
119 |
Q |
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| T |
44988821 |
tattatccgcttgacattttttagtgacagtgaactctcgctaacacgtatatgatcggttcaataattttttaagttgaaccgatcttataagtgtcag |
44988920 |
T |
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| Q |
120 |
ggacatttaaccggctctgataacaataagcccattacacaaataaaccagcccaattccgagaagnnnnnnnnnccctaaaactcac--gtaatgtgtt |
217 |
Q |
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| T |
44988921 |
cgacatttaaccggctctgatatcaataagcccattacacaaataaaccagcccaattccgagaagaaaaaaaaaccctaaaactcacgtgtaatgtgtt |
44989020 |
T |
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| Q |
218 |
tgctttcattctcaattttgcagccaccacaccatttctatccctttgctt |
268 |
Q |
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| T |
44989021 |
tgctttcattctcaattttgcagccaccacaccatttctatcccttcgctt |
44989071 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 21488857 - 21488925
Alignment:
| Q |
55 |
tgtcgctaacacgtataagatcggttcaataatttttta----agttgaaccgatcttataagtgtcag |
119 |
Q |
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| T |
21488857 |
tgtcgctaacacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcag |
21488925 |
T |
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