View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_2 (Length: 485)
Name: NF12575_low_2
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 21 - 477
Target Start/End: Original strand, 54430698 - 54431154
Alignment:
| Q |
21 |
tatgcaagttggtctgttatgcatacatgtgaattcattttggattcctccatttacccaccattcatttagagttatactcctataaggaatatatttg |
120 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430698 |
tatgcaagttggtctgttatgcatacatatgaattcattttggattcctccatttactcaccattcatttagagttatactcctataaggaatatatttg |
54430797 |
T |
|
| Q |
121 |
tcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaatacaaactaatggaattcactttaattagcacttctcactaatg |
220 |
Q |
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| T |
54430798 |
tcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaatacaaactaaaggaattcactttaattagcacttctcactaatg |
54430897 |
T |
|
| Q |
221 |
gagttcatcaatcttctaattgtgtctatctctctcataaatgaacaataatctagatgtggggtaaatgaatggaatctcaactcaagaaacacacaat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430898 |
gagttcatcaatcttctaattgtgtctatctctctcataaatgaacaatagtctagatgtggggtaaatgaatggaatctcaactcaagaaacacacaat |
54430997 |
T |
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| Q |
321 |
tgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctccatttagtcctgttcacttcatatatgcaaaacattgaggacaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430998 |
tgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctccatttagtcctgttcacttcatatatgcaaaacattgaggacaa |
54431097 |
T |
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| Q |
421 |
tccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcttctc |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54431098 |
tccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcttctc |
54431154 |
T |
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