View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_3 (Length: 420)
Name: NF12575_low_3
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 38 - 412
Target Start/End: Original strand, 15304697 - 15305071
Alignment:
| Q |
38 |
atatgggaaactagaattcttaccggaattaggatagaatactagacttcttaccggaataactactagatggcttattaagagaatccattagagcctg |
137 |
Q |
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| T |
15304697 |
atataggaaactagaagtcttaccggaattaggatagaatactagacttcttactggaataactactagatggcttattaagagaatccattagagcctg |
15304796 |
T |
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| Q |
138 |
tagacgttccaactcttctgtactaagtggtttcgaaaattccctttcaccttgtggcaaaaccatgccatctttcacaacctctgagtcctttaccatt |
237 |
Q |
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| T |
15304797 |
tagacgttccaactcttctgtactaagtggtttcgaaaattccctttcaccttgtggcaaaaccatgccatctttcacaacctctgagtcctttaccatt |
15304896 |
T |
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| Q |
238 |
caatcagtacgcctctttgatgatacacctttgaatcctccattgcaccgcccaaataccttctcttttccatgaagtttaaaacaagaatcaatattgt |
337 |
Q |
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| T |
15304897 |
caatcagtacgcctctt---tgatacacctttgaatcctccattgcaccgcccaagtaccttctcttttccatgaagtttaaaacaagaatcaatattgt |
15304993 |
T |
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| Q |
338 |
gatttgacttcctacaatgaccacaccaacga---tcacggctaggctttgcagtgctcaatacacgactttcttctc |
412 |
Q |
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| T |
15304994 |
gatttgacttcctacaatgaccacaccaacgatcttcacggctaggctttgcagtgctcaatacacgactttcttctc |
15305071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15304613 - 15304652
Alignment:
| Q |
1 |
acatataactacattgaaatatgtt-ttttctaaaattat |
39 |
Q |
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| T |
15304613 |
acatataactacattgaaatatgttgttttctaaaattat |
15304652 |
T |
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