View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_5 (Length: 395)
Name: NF12575_low_5
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 17065792 - 17065397
Alignment:
| Q |
1 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatgggattatcaggaac |
100 |
Q |
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| T |
17065792 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatgggattatcaggaac |
17065693 |
T |
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| Q |
101 |
agaggttttcttatatctctnnnnnnnnnntaataataa-ttctgcagtgattctgtttgaatgcaaagtataataatcctcagttttgttctgtttctt |
199 |
Q |
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| T |
17065692 |
agaggttttcttatatctccaaaaaaaaaaaaaaaaaaaattctgcagtgattctgtttgaatgcaaagtataataatcctcagttttgttctgtttctt |
17065593 |
T |
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| Q |
200 |
cgagggatgctacgagtcccgagaa-----------------tgagactgagagatattgaacaaaaatatagaggaagagaatgaattctgaagtattt |
282 |
Q |
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| T |
17065592 |
cgagggatgctacgagtcccgataaactcgagaaatagagagtgagactgagagatattgaacaaaaatatagaggaagagaatgaattctgaagtattt |
17065493 |
T |
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| Q |
283 |
gtcactgaataatgtttttcttgatttgatctgaaattctgaatttgtaggcacaaaaagcctatcaagcaagctaactattctgttagagttaac |
378 |
Q |
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| T |
17065492 |
gtcactgaataatgtttttcttgatttgatctgaaattctgaatttgtaggcacaaaaagcctatcaagcaagctaactattctgttagagttaac |
17065397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 17582566 - 17582961
Alignment:
| Q |
1 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatgggattatcaggaac |
100 |
Q |
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| T |
17582566 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatgggattatcaggaac |
17582665 |
T |
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| Q |
101 |
agaggttttcttatatctctnnnnnnnnnntaataataa-ttctgcagtgattctgtttgaatgcaaagtataataatcctcagttttgttctgtttctt |
199 |
Q |
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||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17582666 |
agaggttttcttatatctccaaaaaaaaaaaaaaaaaaaattctgcagtgattctgtttgaatgcaaagtataataatcctcagttttgttctgtttctt |
17582765 |
T |
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| Q |
200 |
cgagggatgctacgagtcccgagaa-----------------tgagactgagagatattgaacaaaaatatagaggaagagaatgaattctgaagtattt |
282 |
Q |
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| T |
17582766 |
cgagggatgctacgagtcccgataaactcgagaaatagagagtgagactgagagatattgaacaaaaatatagaggaagagaatgaattctgaagtattt |
17582865 |
T |
|
| Q |
283 |
gtcactgaataatgtttttcttgatttgatctgaaattctgaatttgtaggcacaaaaagcctatcaagcaagctaactattctgttagagttaac |
378 |
Q |
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| T |
17582866 |
gtcactgaataatgtttttcttgatttgatctgaaattctgaatttgtaggcacaaaaagcctatcaagcaagctaactattctgttagagttaac |
17582961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37758148 - 37758235
Alignment:
| Q |
1 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatggg |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||| || || ||| ||||||||||| |||||||| |||||||||| |
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| T |
37758148 |
atatgtttggtgaggttgttgctgttactggtgatggaacaaatgacgcccccgcattgcatgaggcagacattggacttgccatggg |
37758235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1625962 - 1626049
Alignment:
| Q |
1 |
atatgtttggtgaggttgttgctgttactggtgatggaatcagtgatgctcctgcactgcatgaggcacacattggagttgccatggg |
88 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
1625962 |
atatgtttggtgaggttgtagctgttactggtgatggaaccaacgatgctcctgcactgcatgagtcagacattggacttgccatggg |
1626049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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