View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12575_low_7 (Length: 374)
Name: NF12575_low_7
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12575_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 35672375 - 35672498
Alignment:
| Q |
18 |
aaatgcacaaaagaagatattttcttagatttatcaaaggaaagtgaagctttacctgttaaaatcaaaatgaacaagctgcatttcttgtgatatttcc |
117 |
Q |
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| T |
35672375 |
aaatgcacaaaagaagatattttcttagatttatcaaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatttcttgtgatatttcc |
35672474 |
T |
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| Q |
118 |
acttgctgcaaaatcacaaaacaa |
141 |
Q |
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| T |
35672475 |
acttgctgcaaaatgacaaaacaa |
35672498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 35672313 - 35672349
Alignment:
| Q |
18 |
aaatgcacaaaagaagatattttcttagatttatcaa |
54 |
Q |
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| T |
35672313 |
aaatgcacaaaagaatatattttcttagatttatcaa |
35672349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38456398 - 38456430
Alignment:
| Q |
22 |
gcacaaaagaagatattttcttagatttatcaa |
54 |
Q |
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| T |
38456398 |
gcacaaaagaagatattttcttagatttatcaa |
38456430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38456460 - 38456492
Alignment:
| Q |
22 |
gcacaaaagaagatattttcttagatttatcaa |
54 |
Q |
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| T |
38456460 |
gcacaaaagaagatattttcttagatttatcaa |
38456492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 29873909 - 29873840
Alignment:
| Q |
52 |
caaaggaaagtgaagctttacctgttaaaatcaaaatgaacaagctgcatttcttgtgatatttccactt |
121 |
Q |
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| T |
29873909 |
caaaggaaagtgaagctttacctattaaaatcaaaatgaacaagctgcatgtcttctgatatttccactt |
29873840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 29868791 - 29868729
Alignment:
| Q |
59 |
aagtgaagctttacctgttaaaatcaaaatgaacaagctgcatttcttgtgatatttccactt |
121 |
Q |
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| T |
29868791 |
aagtgaagctttacctattgaaatcaaaatgaacaagctgcatgtcttctgatatttccactt |
29868729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 44576495 - 44576450
Alignment:
| Q |
62 |
tgaagctttacctgttaaaatcaaaatgaacaagctgcatttcttg |
107 |
Q |
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| T |
44576495 |
tgaagctttaccgattgaaatcaaaatgaacaagctgcatgtcttg |
44576450 |
T |
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