View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12575_low_8 (Length: 342)

Name: NF12575_low_8
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12575_low_8
NF12575_low_8
[»] chr4 (13 HSPs)
chr4 (18-328)||(3671677-3671988)
chr4 (151-311)||(55635535-55635696)
chr4 (151-311)||(54861868-54862028)
chr4 (151-307)||(55665264-55665423)
chr4 (151-302)||(54627314-54627465)
chr4 (211-307)||(52985562-52985658)
chr4 (151-314)||(55659042-55659208)
chr4 (18-149)||(55635315-55635446)
chr4 (18-149)||(55659293-55659424)
chr4 (169-311)||(50191742-50191884)
chr4 (18-138)||(54862124-54862244)
chr4 (22-138)||(55665516-55665632)
chr4 (105-137)||(54627184-54627216)
[»] chr8 (2 HSPs)
chr8 (147-314)||(9889810-9889977)
chr8 (18-149)||(9889600-9889731)
[»] chr2 (2 HSPs)
chr2 (151-311)||(13401715-13401875)
chr2 (18-136)||(13401493-13401611)
[»] chr1 (2 HSPs)
chr1 (192-268)||(37310524-37310600)
chr1 (213-268)||(22514483-22514538)
[»] chr7 (1 HSPs)
chr7 (192-267)||(46154649-46154724)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 3671988 - 3671677
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  3671988 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttacagatatttctatgctgagagttgcaacgcgaaccctgtcaaactttt 3671889  T
Q  118 gcaggggcaaaccacaacccctgtttgagcagttgaggccagcacttcccactctcgagcgtttgatt-ttttccaatgatcaagaagtcctggcagatg 216  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  3671888 gcatgggcaaaccacaacccctgtttgagcagttgacgccagcacttcccactctcgagcgtttgatttttttccaatgatcaagaagtcatggcagatg 3671789  T
Q  217 catgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  3671788 catgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtggagctcctttcgaa 3671689  T
Q  317 cccatctccttc 328  Q
    ||||||||||||    
T  3671688 cccatctccttc 3671677  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 151 - 311
Target Start/End: Original strand, 55635535 - 55635696
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcat-atctttctgatggaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  55635535 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaa 55635634  T
Q  250 caaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 311  Q
      ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  55635635 tgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcctt 55635696  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 311
Target Start/End: Complemental strand, 54862028 - 54861868
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 250  Q
    |||||||||| |||||| ||||| ||| |||| |||||||||| ||  ||||||||||  | |||||||| ||||||||||| |||||||||||||||||    
T  54862028 tgaggccagcgcttcccgctctcaagcatttggttttttccaaagacgaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaac 54861929  T
Q  251 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 311  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54861928 aaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctcctt 54861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 55665423 - 55665264
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatga---tcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatgg 247  Q
    |||||||||| || ||| |||| |||||||||||||| ||||||||   | |||||||||||   |||||||| |||||| |||||||||||||||||||    
T  55665423 tgaggccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctgatgg 55665324  T
Q  248 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55665323 aacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagct 55665264  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 302
Target Start/End: Original strand, 54627314 - 54627465
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 250  Q
    ||||| |||| |||||| ||||| || ||||| |||||||||| ||| |||  |||||| | || ||||| ||||||||||| |||||||||||||||||    
T  54627314 tgaggtcagcgcttcccgctctcaagtgtttggttttttccaaagatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaac 54627413  T
Q  251 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtg 302  Q
    || ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  54627414 aagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg 54627465  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 52985658 - 52985562
Alignment:
Q  211 cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 307  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  52985658 cagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagct 52985562  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 314
Target Start/End: Complemental strand, 55659208 - 55659042
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttct---gatgg 247  Q
    |||||| ||||||||| || |||  |||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||    ||||    
T  55659208 tgaggcaagcacttcctaccctcaggcgtttgattttttccaatgatgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatgg 55659109  T
Q  248 aacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 314  Q
      |||||||| ||||||||||||| |||||||| ||  ||||||  ||||| || ||||||||||||    
T  55659108 ttcaaatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttg 55659042  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 55635315 - 55635446
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    |||||||||||||||||| |||| || ||||||||||| ||||||||||  |||    ||||||||||||||||||| ||  | ||| ||||||||||||    
T  55635315 gttctcagtcatggtgccctgattccactgttatcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaactttt 55635414  T
Q  118 gcaggggcaaaccacaacccctgtttgagcag 149  Q
    ||||||| || ||||||||||| |||||||||    
T  55635415 gcaggggaaagccacaacccctatttgagcag 55635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 55659424 - 55659293
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||  ||| |  ||||||||||||||||||| |||    |||||||||||||||    
T  55659424 gttctcagtcatggtgcgttgatcccgctgttatcccagttgaatgagcaagcaaagctttctatgctgagaattgctacgttggccctgtcaaactttt 55659325  T
Q  118 gcaggggcaaaccacaacccctgtttgagcag 149  Q
    |||| || ||||||| |||||  |||||||||    
T  55659324 gcagaggaaaaccaccacccccatttgagcag 55659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 50191884 - 50191742
Alignment:
Q  169 ctctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 268  Q
    |||| |||||||||||||| ||  | ||| ||||||| ||| ||||||| ||||||||  | ||||| || |||||||| |||||||||||||||||||     
T  50191884 ctcttgagcgtttgattttgtcggaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga 50191785  T
Q  269 ggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 311  Q
      | || || ||||||||||||||| || ||||| ||||||||    
T  50191784 aattattgacgcaggtgtatgtggccgattggtgcagctcctt 50191742  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 54862244 - 54862124
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| |   ||||  ||| |||  |||||| ||| |   | ||| ||||||||||||    
T  54862244 gttctcagtcatggtgccctgatcccgctgttatcccagttgaatgaccaaacagagctttatatattgagaaatgccatttggaccttgtcaaactttt 54862145  T
Q  118 gcaggggcaaaccacaacccc 138  Q
    |||||||||| ||||||||||    
T  54862144 gcaggggcaagccacaacccc 54862124  T

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Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 55665632 - 55665516
Alignment:
Q  22 tcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgcag 121  Q
    |||||||||||||  |||||||||||||| |||| ||||||||||  ||| |  |||||||||||||| |||| ||| | |||||||||| ||||||||     
T  55665632 tcagtcatggtgcgctgatcccgctgttaacccagttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaa 55665533  T
Q  122 gggcaaaccacaacccc 138  Q
     ||||| |||| |||||    
T  55665532 aggcaagccaccacccc 55665516  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 54627184 - 54627216
Alignment:
Q  105 ctgtcaaacttttgcaggggcaaaccacaaccc 137  Q
    ||||||||||||||||||||||| |||||||||    
T  54627184 ctgtcaaacttttgcaggggcaagccacaaccc 54627216  T

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Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 147 - 314
Target Start/End: Original strand, 9889810 - 9889977
Alignment:
Q  147 cagttgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 246  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889810 cagttgaggccagcacttcccactctcgagcttttgattttttccaatgatgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatg 9889909  T
Q  247 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889910 gaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttg 9889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 9889600 - 9889731
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889600 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 9889699  T
Q  118 gcaggggcaaaccacaacccctgtttgagcag 149  Q
    | ||||||||||| ||||||||||||||||||    
T  9889700 gtaggggcaaaccgcaacccctgtttgagcag 9889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 311
Target Start/End: Original strand, 13401715 - 13401875
Alignment:
Q  151 tgaggccagcacttcccactctcgagcgtttgattttttccaatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaac 250  Q
    ||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  13401715 tgaggccagcacttccggctcttgagcgtttggttttttcaaatgatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaac 13401814  T
Q  251 aaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcctt 311  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  13401815 aaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctcctt 13401875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 13401493 - 13401611
Alignment:
Q  18 gttctcagtcatggtgccatgatcccgctgttatcccacttgaatgagcttgcagatatttctatgctgagaattgcaacgcgaaccctgtcaaactttt 117  Q
    ||||| || ||||||||| |||||||||||||| |||| ||||||||||  ||| |  |||| |||||||||| ||| ||  | || |||||||||||||    
T  13401493 gttcttagccatggtgccctgatcccgctgttaacccagttgaatgagcaggcaaagctttcaatgctgagaaatgccacatggactctgtcaaactttt 13401592  T
Q  118 gcaggggcaaaccacaacc 136  Q
    |||||||||| ||||||||    
T  13401593 gcaggggcaagccacaacc 13401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 37310600 - 37310524
Alignment:
Q  192 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 268  Q
    |||||| |||||||| || | ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||    
T  37310600 aatgatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagc 37310524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 22514538 - 22514483
Alignment:
Q  213 gatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 268  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  22514538 gatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagc 22514483  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 46154724 - 46154649
Alignment:
Q  192 aatgatcaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaag 267  Q
    |||||| |||||||| || | ||||| || |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  46154724 aatgatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

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