View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12575_low_9 (Length: 286)

Name: NF12575_low_9
Description: NF12575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12575_low_9
NF12575_low_9
[»] chr3 (13 HSPs)
chr3 (1-148)||(33794436-33794581)
chr3 (2-148)||(40560687-40560832)
chr3 (1-148)||(14783737-14783883)
chr3 (1-148)||(5048006-5048152)
chr3 (1-153)||(31724350-31724501)
chr3 (1-148)||(20124657-20124804)
chr3 (65-154)||(5048294-5048383)
chr3 (1-142)||(2439997-2440137)
chr3 (73-148)||(2439772-2439847)
chr3 (82-148)||(14784027-14784094)
chr3 (84-148)||(31724657-31724721)
chr3 (71-148)||(40560476-40560552)
chr3 (71-148)||(33794729-33794804)
[»] chr1 (11 HSPs)
chr1 (1-148)||(7709929-7710075)
chr1 (1-148)||(34492456-34492602)
chr1 (1-148)||(52331634-52331780)
chr1 (65-148)||(52331409-52331492)
chr1 (65-148)||(7709702-7709785)
chr1 (16-148)||(13618343-13618474)
chr1 (73-148)||(13618582-13618657)
chr1 (1-148)||(37646884-37647030)
chr1 (85-148)||(34492239-34492302)
chr1 (84-148)||(13618258-13618322)
chr1 (83-148)||(37646744-37646809)
[»] chr8 (4 HSPs)
chr8 (1-163)||(3068761-3068922)
chr8 (1-148)||(3305846-3305992)
chr8 (65-148)||(3069064-3069147)
chr8 (65-148)||(3305621-3305704)
[»] chr4 (14 HSPs)
chr4 (1-154)||(41315895-41316047)
chr4 (1-148)||(42305907-42306052)
chr4 (2-148)||(23254605-23254750)
chr4 (1-148)||(15874230-15874376)
chr4 (1-148)||(20878695-20878841)
chr4 (65-148)||(23254379-23254462)
chr4 (1-148)||(38484463-38484610)
chr4 (66-148)||(42306195-42306277)
chr4 (71-153)||(15874524-15874606)
chr4 (74-148)||(41316198-41316271)
chr4 (71-148)||(55893467-55893544)
chr4 (1-148)||(55893216-55893359)
chr4 (82-148)||(38485175-38485241)
chr4 (98-148)||(20878980-20879030)
[»] chr2 (6 HSPs)
chr2 (1-148)||(12414064-12414210)
chr2 (1-148)||(12426124-12426270)
chr2 (1-148)||(4731910-4732056)
chr2 (65-148)||(4731717-4731800)
chr2 (84-148)||(12413840-12413904)
chr2 (84-148)||(12425900-12425964)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-148)||(7492-7638)
scaffold0428 (65-148)||(7765-7848)
[»] chr7 (9 HSPs)
chr7 (1-148)||(24825787-24825933)
chr7 (1-148)||(32793010-32793156)
chr7 (1-148)||(37873419-37873565)
chr7 (1-148)||(11324275-11324421)
chr7 (71-148)||(24825561-24825638)
chr7 (73-148)||(32792785-32792860)
chr7 (1-148)||(37879077-37879223)
chr7 (83-147)||(9402563-9402627)
chr7 (84-147)||(11324056-11324119)
[»] chr6 (15 HSPs)
chr6 (1-148)||(33746714-33746860)
chr6 (1-148)||(6851251-6851397)
chr6 (1-148)||(16766291-16766437)
chr6 (1-148)||(16368827-16368973)
chr6 (71-148)||(20582638-20582715)
chr6 (71-148)||(16766556-16766633)
chr6 (74-148)||(29846978-29847052)
chr6 (71-148)||(11246347-11246424)
chr6 (85-148)||(33746961-33747024)
chr6 (1-124)||(20582835-20582957)
chr6 (65-148)||(11242294-11242377)
chr6 (84-153)||(16368638-16368707)
chr6 (84-148)||(29846791-29846855)
chr6 (170-265)||(14040994-14041088)
chr6 (84-148)||(6851549-6851612)
[»] chr5 (6 HSPs)
chr5 (1-148)||(31155569-31155715)
chr5 (1-148)||(39761541-39761687)
chr5 (65-148)||(39760426-39760509)
chr5 (1-162)||(31155881-31156041)
chr5 (65-148)||(31156183-31156266)
chr5 (90-148)||(31155372-31155430)
[»] scaffold0184 (2 HSPs)
scaffold0184 (5-148)||(7183-7326)
scaffold0184 (73-153)||(7015-7095)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-148)||(10956-11102)
scaffold0291 (1-148)||(11282-11428)
[»] scaffold0032 (2 HSPs)
scaffold0032 (65-147)||(33206-33288)
scaffold0032 (1-111)||(32959-33070)
[»] scaffold1408 (1 HSPs)
scaffold1408 (73-148)||(1746-1821)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33794581 - 33794436
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  33794581 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt--gcggggactgatttctgaatttttattttacaagga 33794484  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  33794483 ccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 33794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 40560687 - 40560832
Alignment:
Q  2 attttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaaggac 101  Q
    ||||| |||| || ||||||||||||||||| |||||| |||||||||||| |||        ||||| |||||||||||||||||||||||||||||||    
T  40560687 attttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaggac 40560785  T
Q  102 gaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  40560786 caaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 40560832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 14783883 - 14783737
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| || | |        ||||| ||||||||||||||||||||||||||||||    
T  14783883 cattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgaca-aatttttttgcggggactgatttctgaatttttattttacaagga 14783785  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| |||||||||||||||| |||||||||||||||    
T  14783784 ccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 14783737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 5048152 - 5048006
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||| |||||||||| | |||||| |||||||||||| |||        ||||| |||||||||||||||||||||||||||| |    
T  5048152 cattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttc-gcggggactgatttctgaatttttattttacaagaa 5048054  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||||||||||||||| || ||||||||||||||||||||    
T  5048053 ccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaag 5048006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31724501 - 31724350
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  || ||| |||||||||||| | |        ||||| ||||||||||||||||||||||||||||||    
T  31724501 cattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattttacaagga 31724403  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 153  Q
    | |||| |||||||| ||||||||||| |||||||||||||||||||| ||||    
T  31724402 ccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcctta 31724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 20124804 - 20124657
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcac-aggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagg 99  Q
    |||||||||||||| |||| |||||||||||| | ||||| |||||||||||| | |        ||||| ||||||||||||||||||||||||||| |    
T  20124804 cattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattttacaaag 20124706  T
Q  100 acgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  20124705 accaaaacttaaacggaccatatttacagggacgagtgcaatatttaag 20124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 5048294 - 5048383
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttat 154  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttat 5048383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2439997 - 2440137
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||| |||||||||| | |||||| |||||||||||| |||        ||||| |||||||||||||||||||||||||||| |    
T  2439997 cattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaagaa 2440095  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaata 142  Q
    | |||||||||||||||||||||| || ||||||||||||||    
T  2440096 ccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 2439847 - 2439772
Alignment:
Q  73 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2439847 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 2439772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 14784027 - 14784094
Alignment:
Q  82 aatttttatttt-acaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 14784094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 31724657 - 31724721
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||| |||||  |||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaag 31724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 40560552 - 40560476
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||||||||| ||||||| |||| |||| | |||||   |||||||||||||||| ||||||||||||||    
T  40560552 actgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaag 40560476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 33794729 - 33794804
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||| |||||  |||||| |||| |||| | |||||   |||||||||||||||||||||||||||||||    
T  33794729 actgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaag 33794804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 7709929 - 7710075
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||        ||  | ||||||||||||||||||||||||||||||    
T  7709929 cattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcaaggactgatttctgaatttttattttacaagga 7710027  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7710028 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 7710075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 34492456 - 34492602
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        |||||||||||| |||||||||||||||||||||||    
T  34492456 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcgggaactgatgtctgaatttttattttacaagga 34492554  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  34492555 ccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaag 34492602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 52331634 - 52331780
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||||||||||| | |        ||||| |||||||||| |||||||||||||||||||    
T  52331634 cattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagata-aatttttttgcggggactgatttctaaatttttattttacaagga 52331732  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
      ||||||||||||| ||||||||||||||||||||||||||||||||    
T  52331733 tcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 52331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 52331492 - 52331409
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 52331409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 7709785 - 7709702
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaag 7709702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 13618343 - 13618474
Alignment:
Q  16 tcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacgg 115  Q
    ||||||||||||||||| |||||| |||||||||||| |||        || || | |||||||||| |||||||||||||||||| |||||||||||||    
T  13618343 tcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gctgggattgatttctgattttttattttacaaggaccaaaacttaaacgg 13618441  T
Q  116 accatatttgcagggacgagtgcaatatttaag 148  Q
     |||||||||||||||||| |||||||||||||    
T  13618442 gccatatttgcagggacgaatgcaatatttaag 13618474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 13618582 - 13618657
Alignment:
Q  73 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  13618582 tgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaag 13618657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 37646884 - 37647030
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        ||  | |||||||| |||||||||||||||||||||    
T  37646884 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcacggactgatttttgaatttttattttacaagga 37646982  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||  ||||||||||||  |||| |||||||||||||    
T  37646983 ccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaag 37647030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 34492302 - 34492239
Alignment:
Q  85 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 34492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 13618322 - 13618258
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||| |||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaag 13618258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 37646809 - 37646744
Alignment:
Q  83 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||| ||||||| |||| ||||   ||||| | ||||||||||||||||| |||||||||||||    
T  37646809 attttttttttacagggactaaaatcaaaacgaagcatatttgcagggacgaatgcaatatttaag 37646744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3068922 - 3068761
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  3068922 cattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaagga 3068824  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttataactataat 163  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  3068823 ccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccttttaacaataat 3068761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3305846 - 3305992
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||        ||||| |||||||||| |||||||||||||||||||    
T  3305846 cattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcggggactgatttctaaatttttattttacaagga 3305944  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||    
T  3305945 agaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 3305992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 3069064 - 3069147
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 3069147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 3305704 - 3305621
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaag 3305621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 41316047 - 41315895
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  41316047 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaagga 41315949  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttat 154  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41315948 ccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagccttat 41315895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 42306052 - 42305907
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||| ||||    
T  42306052 cattttggtgacttgtcatgacttaaatggg-acaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacgagga 42305955  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42305954 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 42305907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 23254605 - 23254750
Alignment:
Q  2 attttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaaggac 101  Q
    ||||||||||||| |||||||||||||| || |||| | |||||||||||| |||        ||||| |||||||||||||||||||||||||||||||    
T  23254605 attttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaggac 23254703  T
Q  102 gaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  23254704 caaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 23254750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 15874376 - 15874230
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||| |||||||| || |||||| |||||||||||| | |        ||||| ||||||||||||||||||||||||||||||    
T  15874376 cattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattttacaagga 15874278  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15874277 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 15874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 20878841 - 20878695
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  20878841 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcggggactgatttctgaatttttattttacaagga 20878743  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| ||||||||||||||| ||||| ||| ||||||    
T  20878742 ccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaag 20878695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 23254462 - 23254379
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 23254379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 38484610 - 38484463
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||| | |||||  |||||||||||| |||        ||    ||||||||||||||||||||||||||||||    
T  38484610 cattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttctgaatttttattttacaagga 38484511  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  38484510 ccaaaacttaaacgggccatatttacagagacgagtgcaatatttaag 38484463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 42306195 - 42306277
Alignment:
Q  66 cgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaag 42306277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 15874524 - 15874606
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 153  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  15874524 actgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcctta 15874606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 41316198 - 41316271
Alignment:
Q  74 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  41316198 gatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaag 41316271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 55893467 - 55893544
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||| |||||||||||||||||||||||    
T  55893467 actgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaag 55893544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 55893359 - 55893216
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||||||||||| || |||||  |||||||||||| |||        ||||| |   |||||||||||||||||||||||  |    
T  55893359 cattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagattttttt-gcgggga---atttctgaatttttattttacaataa 55893264  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| |||||||||||| |||| ||||||||||||||    
T  55893263 ccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaag 55893216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 38485175 - 38485241
Alignment:
Q  82 aatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 38485241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 20878980 - 20879030
Alignment:
Q  98 ggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  20878980 ggacgaagacttaaacgggccatatttgcagggacgagtgtaatatttaag 20879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12414064 - 12414210
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  12414064 cattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaagga 12414162  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  12414163 tgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 12414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12426124 - 12426270
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||||||    
T  12426124 cattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaagga 12426222  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  12426223 tgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 12426270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4731910 - 4732056
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||  |||||||||||| | |        ||||| ||||||||||||||||||||||||||||||    
T  4731910 cattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatattttttt-gcggggactgatttctgaatttttattttacaagga 4732008  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  4732009 ccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaag 4732056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 4731800 - 4731717
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaag 4731717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 12413904 - 12413840
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 12413840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 12425964 - 12425900
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaag 12425900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 7638 - 7492
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        ||||| | |||||||||||||||||||||| |||||    
T  7638 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggattgatttctgaatttttattttagaagga 7540  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7539 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 7492  T

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Target: scaffold0428; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 7765 - 7848
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaag 7848  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 24825787 - 24825933
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| | ||||||||||||||| |||||| |||||||||||| |||        ||||| ||||||||||||||||||||||| ||||||    
T  24825787 cattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttatttttcaagga 24825885  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  24825886 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 24825933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32793010 - 32793156
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||||| |||        || || ||||||||||||||||||||||||||||||    
T  32793010 cattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcagggactgatttctgaatttttattttacaagga 32793108  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| | ||||||||||||||||||||||||||||||    
T  32793109 ccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaag 32793156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37873565 - 37873419
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||| | |||| | |||||||||| |||||| |||||||||||| |||        || || ||||||||||||||||||||||||||||||    
T  37873565 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggactgatttctgaatttttattttacaagga 37873467  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  37873466 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 37873419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11324275 - 11324421
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||||| |||        ||||  | ||||||||||||||||||||||||||||    
T  11324275 cattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggagattgatttctgaatttttattttacaagga 11324373  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||  |||||||||||||||||| |||||||||||||    
T  11324374 ccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaag 11324421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 24825638 - 24825561
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  24825638 actgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaag 24825561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 32792860 - 32792785
Alignment:
Q  73 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  32792860 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaag 32792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 37879077 - 37879223
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||| | |||| | |||||||||| |||||| |||||||||||| |||        || || | ||||||||||||||||||||||||||||    
T  37879077 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggattgatttctgaatttttattttacaagga 37879175  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||||||  ||||||||||||||||||| |||||||||||    
T  37879176 ccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaag 37879223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 9402627 - 9402563
Alignment:
Q  83 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 147  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 9402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 11324119 - 11324056
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 147  Q
    ||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaa 11324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33746860 - 33746714
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        || || | |||||||||||||||||||||||| |||    
T  33746860 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcagggattgatttctgaatttttattttacatgga 33746762  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33746761 cgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 33746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6851397 - 6851251
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||||||||||||   |||||| |||||||||||| ||         | ||||||||||||||||||||||||||||||| ||    
T  6851397 cattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacag-ttttttttgtgggaactgatttctgaatttttattttacaaaga 6851299  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||||||| |||||||||| ||||||||||||||||||||    
T  6851298 ccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaag 6851251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 16766437 - 16766291
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    ||||||||||||||  |||||||||||||||| || ||| |||||||||||| |||        ||||| ||||||||||||||||||||||||||| ||    
T  16766437 cattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaaga 16766339  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||| ||  |||||||||||||||||||||||||||||||    
T  16766338 ccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaag 16766291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 16368827 - 16368973
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||||| |||||||||| |||||| |||||||||||| | |          |||| |||||||||||||||| |||||||| |||    
T  16368827 cattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtaggga-ctgatttctgaattttcattttacacgga 16368925  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||    
T  16368926 ccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaag 16368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 20582715 - 20582638
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20582715 actgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 16766556 - 16766633
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaag 16766633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 29846978 - 29847052
Alignment:
Q  74 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 29847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 11246347 - 11246424
Alignment:
Q  71 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||| ||||||||||||||||||||||  |||||||||| || |||||||||||||| ||||||||||||||||    
T  11246347 actgatttgtgaatttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaag 11246424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 33746961 - 33747024
Alignment:
Q  85 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaag 33747024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 20582835 - 20582957
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    ||||||| |||||| ||||||||||||||||| |||||  |||||||||||| |||        |||||  ||||||||| |||||||||||||||||||    
T  20582835 cattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacagattttttt-gcggggtctgatttctaaatttttattttacaagga 20582933  T
Q  101 cgaaaacttaaacggaccatattt 124  Q
    | ||||||||||||| ||||||||    
T  20582934 ccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 11242377 - 11242294
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||| |  ||||||||   |||||||||||||||||||||    
T  11242377 gcggggactgatttctgaatttttattttacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaag 11242294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 16368707 - 16368638
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 153  Q
    ||||| ||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcctta 16368638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 29846855 - 29846791
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaag 29846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 14040994 - 14041088
Alignment:
Q  170 ttgtagaacacgctgtagatcctaatatacaggcattctcttgagtttatttaatttttcttgcacactaaaaacatgacttagttgtgatcttta 265  Q
    ||||| |||||| ||||||||| |||||||| |||| |||||  |||||| || |||||||| |||||||||| |||||||||||||| |||||||    
T  14040994 ttgtacaacacgttgtagatccaaatatacatgcatgctcttatgtttatata-tttttctttcacactaaaagcatgacttagttgtaatcttta 14041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 6851549 - 6851612
Alignment:
Q  84 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||||||| | |||||||||||||||  |||||||||||| |||| ||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaag 6851612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31155569 - 31155715
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| || ||| |||||||||||| | |        ||||| ||||||||||||||||||||||||||||||    
T  31155569 cattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattttacaagga 31155667  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||||||||||||  |||||||||||||||||||||||||||||||    
T  31155668 ccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 31155715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 39761541 - 39761687
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||        || || ||||||||||||||||||||||||||||||    
T  39761541 cattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcagggactgatttctgaatttttattttacaagga 39761639  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||  |||||||||||||||| |||||||||||||||    
T  39761640 ccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaag 39761687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 39760509 - 39760426
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 39760426  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 31156041 - 31155881
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    |||||||||||||| |||| |||||||||||| |||||| |||||||||||| | |        ||| | ||||||||||||||||||||||||||||||    
T  31156041 cattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatattttttt-gcgaggactgatttctgaatttttattttacaagga 31155943  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggcttataactataa 162  Q
    | ||||||||||||   ||||||||||||||||||  ||||||||||| | ||||| |||||    
T  31155942 ccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagccatataaatataa 31155881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 31156183 - 31156266
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaag 31156266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 31155430 - 31155372
Alignment:
Q  90 ttttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaag 31155372  T

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Target: scaffold0184 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 7183 - 7326
Alignment:
Q  5 ttggtgacttatcatgacttaaatgggcacaggggcatttttaaaa-gagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacga 103  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||| || |||        ||||| ||||||||||||||||||||||||||||||| |    
T  7183 ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaggacca 7281  T
Q  104 aaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||| |||||||||||||||||| | |||||||||||    
T  7282 aaacttaaacgggccatatttgcagggacgaatccaatatttaag 7326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 7095 - 7015
Alignment:
Q  73 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaaggctta 153  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7095 tgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcctta 7015  T

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Target: scaffold0291 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11102 - 10956
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    ||||||| |||||| |||| || ||||||||| |||||| |||||||||||| |||        ||| | ||||||||||||||||||||||||||||||    
T  11102 cattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattttacaagga 11004  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | |||| |||||||| ||||||||||||||||||||||||||||||||    
T  11003 ccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaag 10956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11282 - 11428
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 100  Q
    ||||||| |||||| |||| || ||||||||| |||||| |||||||||||| |||        ||| | ||||||||||||||||||||||||||||||    
T  11282 cattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattttacaagga 11380  T
Q  101 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    | ||||||||||||| |||||||| |||||||||||||||||||||||    
T  11381 ccaaaacttaaacgggccatatttacagggacgagtgcaatatttaag 11428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 33206 - 33288
Alignment:
Q  65 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 147  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaa 33288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33070 - 32959
Alignment:
Q  1 cattttggtgacttatcatgacttaaatgggcacaggggcatttttaaaagagagannnnnnnn-gcgggaactgatttctgaatttttattttacaagg 99  Q
    |||||||||||||| |||||||||| |||||  |||||| |||||||||||| |||         ||||| |||||||||||||||||||||||||||||    
T  33070 cattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggggactgatttctgaatttttattttacaagg 32971  T
Q  100 acgaaaacttaa 111  Q
    || |||||||||    
T  32970 accaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 1821 - 1746
Alignment:
Q  73 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 148  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1821 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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