View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12576_low_1 (Length: 382)
Name: NF12576_low_1
Description: NF12576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12576_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 30840833 - 30840638
Alignment:
| Q |
20 |
aaggtgtcatgtaataatgcaacacaaattggaatctaaattccaaatatctcaatttccttttcattttgtttaacaatactctcttacttatnnnnnn |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30840833 |
aaggtgtcatgtaataatgcaacacaaattggaatctaaattccaaatatctcaatttccttttcattttgtttaacaatactctcttacttataaaaag |
30840734 |
T |
|
| Q |
120 |
nnnnnngatatacattaagagagttaataacatgattaattgaaaagaaatgaatcatataaatgtattagaaggaaaagtgtaagcaaaatataaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
30840733 |
aaaaaagatatacattaagagagttaataacatgattaattgaaaagaaatgaatcatataaatgcattagaaggaaaagtat-agcaaaatataaa |
30840638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 249 - 368
Target Start/End: Complemental strand, 30840605 - 30840489
Alignment:
| Q |
249 |
catgcctaactcatgtacggtaaggaactacaagaataggaacgtggagtataacatcactattattattattattttcaattgatccacgacacttggg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30840605 |
catgcctaactcatgtacggtaaggaactacaagaataggaacgtggagtataacatcattattattat---tattttcaattgatccacgacacttggg |
30840509 |
T |
|
| Q |
349 |
gtcccaaaaaaggagcagtg |
368 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30840508 |
gtcccaaaaaaggagcagtg |
30840489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University