View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12576_low_5 (Length: 217)
Name: NF12576_low_5
Description: NF12576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12576_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 44704448 - 44704632
Alignment:
| Q |
18 |
aacctgaagcttcacatcttccttcacaaattctgtacagaaacaatttgaaagagaagacaaaaatattcacaagttattctcgttttcatagcaccaa |
117 |
Q |
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| T |
44704448 |
aacctgaagcttcacatcttccttcacaaattctgtacagaaacaatttgaaagagaagacaaaaatattcacaagttattctcgttttcatggcatcaa |
44704547 |
T |
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| Q |
118 |
tcttgactgataattgtacaaaaaatccttgtaaataattcattggttttttcttagattattctcacatgaaacaagtaattac |
202 |
Q |
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| T |
44704548 |
tcttgactgataattgtacaaaaaatccttgtaaatagttcattggttttttcttagattattctcacatgaaacaagtaattac |
44704632 |
T |
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