View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12576_low_6 (Length: 212)
Name: NF12576_low_6
Description: NF12576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12576_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2151803 - 2151981
Alignment:
| Q |
1 |
cgtcttggtacgtggtaataggttttagtcacataattcacaatttgttttggtacgtggtaatagtatgcgatatgagacgagtttggtatatatatga |
100 |
Q |
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| T |
2151803 |
cgtcttggtacgtgctaataggttttagtcacataattcacaatttgttttggtacgtggtaatagtatgcgatatgagaagagtttggtatatatatga |
2151902 |
T |
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| Q |
101 |
gtatagagttttggtacacgttgattcatattattagaatttttaagtggaagttaaaatttacaggtgatcatcacta |
179 |
Q |
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| T |
2151903 |
gtatagagtttcggtacacgttgattcatattattagaatttttaagcggaagttaaaatttacaggtgatcataacta |
2151981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 2151776 - 2151823
Alignment:
| Q |
19 |
taggttttagtcacataattcacaatttgttttggtacgtggtaatag |
66 |
Q |
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| T |
2151776 |
taggttttagtcacataattcacaattcgtcttggtacgtgctaatag |
2151823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 43721822 - 43721858
Alignment:
| Q |
26 |
tagtcacataattcacaatttgttttggtacgtggta |
62 |
Q |
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| T |
43721822 |
tagtcacataattcacaattcgtgttggtacgtggta |
43721858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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