View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12577_high_2 (Length: 335)
Name: NF12577_high_2
Description: NF12577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12577_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 51144892 - 51145199
Alignment:
| Q |
2 |
ggggagaaacaagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggtttggtacac |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144892 |
ggggagaaacaagctacagctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggtttggtacac |
51144991 |
T |
|
| Q |
102 |
tcnnnnnnnnnnnnatctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaat |
201 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144992 |
tcttttttgtttttatctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaat |
51145091 |
T |
|
| Q |
202 |
ttttgctgtattgattggttcaacgtaagatttgttttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataagata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51145092 |
ttttgctgtattgattggttcaacgtaagatttgttttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataagata |
51145191 |
T |
|
| Q |
302 |
tgaagatg |
309 |
Q |
| |
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|||||||| |
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| T |
51145192 |
tgaagatg |
51145199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51156031 - 51156333
Alignment:
| Q |
1 |
tggggagaaacaagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggtttggtaca |
100 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||| || || || ||| |||||||||||||||| ||||||||||| ||||||| | || |
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| T |
51156031 |
tggggagaaacaagctataactaaatataatcagtccttaatcaaggtttataacacttcagtgcaagaggcactagcatctggtgtggggtttgctgca |
51156130 |
T |
|
| Q |
101 |
ctcnnnnnnnnnnnnatctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaa |
200 |
Q |
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||| |||| |||||||||||||||||| |||| |||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
51156131 |
ctcttttttgtttttatctccagttatggtttggctgtttggtatggtgggaaattgataatagagaaaggatatacaggtggggatgttatgactgtaa |
51156230 |
T |
|
| Q |
201 |
tttttgctgtattgattggttcaacgtaagatttgt-tttctttttctccctttctatgagcctaatatttctacaatttattcctttccactcataaga |
299 |
Q |
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||||||||||||||| |||||||| ||||||||||| || ||||||| | || ||||||||| | ||||||| |||||||| |||||||||| ||||| |
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| T |
51156231 |
tttttgctgtattgactggttcaatgtaagatttgtgttgttttttcttctttactatgagccaataatttctaaaatttatttctttccactcgtaaga |
51156330 |
T |
|
| Q |
300 |
tat |
302 |
Q |
| |
|
||| |
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| T |
51156331 |
tat |
51156333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29938057 - 29937827
Alignment:
| Q |
1 |
tggggagaaacaagctacggctaattataatcgatccttaatcaaagtctacaagactgcagtgcaagaggcactggcatctggtgttgggtttggtaca |
100 |
Q |
| |
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|||||||||||||||||| | || ||||||| ||||||||||| || ||||| ||| |||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
29938057 |
tggggagaaacaagctacaacaaaatataatcattccttaatcaaggtttacaatactacagtgcaagaggcactagcatctggtgtggggtttgctaca |
29937958 |
T |
|
| Q |
101 |
ctcnnnnnnnnnnnnatctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaa |
200 |
Q |
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|| |||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| || |||||||||||| |
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| T |
29937957 |
atcttttttgtttttatctccagttacagtttggctgtatggtttggtgggaaattgataatagagaaaggatatacaggaggcgatgttatgactgtac |
29937858 |
T |
|
| Q |
201 |
tttttgctgtattgattggttcaacgtaaga |
231 |
Q |
| |
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| ||||| |||||| |||||||| |||||| |
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| T |
29937857 |
tatttgcaatattgactggttcaatgtaaga |
29937827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 51198951 - 51199044
Alignment:
| Q |
122 |
agttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgctgtattga |
215 |
Q |
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||||||||||| || |||||||||||||| |||||| |||| ||||||||||| || |||||||| ||| ||||| |||||||||||||||||| |
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| T |
51198951 |
agttatggtttagcagtatggtttggtggaaaaatggtaatagagaaaggatataccggaggggaagttgtgactataatttttgctgtattga |
51199044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 51212185 - 51212250
Alignment:
| Q |
118 |
ctgcagttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggagg |
183 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||| ||| || |||||||||| || |||||||| |
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| T |
51212185 |
ctgcagttatgctttggctgtatggtttggagggaagatggtacttgagaaaggttatacaggagg |
51212250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 36285374 - 36285456
Alignment:
| Q |
125 |
tatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgc |
207 |
Q |
| |
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|||||||||||| ||||||||||||| ||| || || | |||||||| |||||||||||| || ||||||| ||||| ||||| |
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| T |
36285374 |
tatggtttggctatatggtttggtggcaaattggtagtagagaaagggtacacaggagggaacattatgaccgtaatatttgc |
36285456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 49738002 - 49737917
Alignment:
| Q |
122 |
agttatggtttggctgtatggtttggtgggaaaatgataattgagaaaggatacacaggaggggacgttatgactgtaatttttgc |
207 |
Q |
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||||||| |||||||||||||||||| ||||| |||||| | | |||||| || ||||||||||| || || | |||| ||||||| |
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| T |
49738002 |
agttatgctttggctgtatggtttggagggaagatgatattagcgaaaggttatacaggaggggaagtcataagtgtattttttgc |
49737917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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