View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12577_high_4 (Length: 225)
Name: NF12577_high_4
Description: NF12577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12577_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 35035440 - 35035242
Alignment:
| Q |
15 |
cattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgct |
114 |
Q |
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| T |
35035440 |
cattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgct |
35035341 |
T |
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| Q |
115 |
tgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctct |
213 |
Q |
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| T |
35035340 |
tgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctct |
35035242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 34974660 - 34974520
Alignment:
| Q |
68 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
167 |
Q |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
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| Q |
168 |
cctaagagcaaatccattatgtgttcaaattctatatttca |
208 |
Q |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttca |
34974520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 34956119 - 34956057
Alignment:
| Q |
147 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcat |
209 |
Q |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcat |
34956057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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