View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12577_low_1 (Length: 549)
Name: NF12577_low_1
Description: NF12577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12577_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 50548722 - 50548968
Alignment:
| Q |
21 |
atatgtcacaagatttattaaatctttttgcattgatttctatataaaatataatgtgcttttgaataactctgaacatgaatggttaataatgattttg |
120 |
Q |
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| T |
50548722 |
atatgtcacaagatctattaaatctttttgcattgatttctatataaaatataatgagcttttgaataactctgaacatgaatggttaataatgattttg |
50548821 |
T |
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| Q |
121 |
gagtaaaactataaggagaataatgttcaaataactgttaaattaaaacaatattttcttagttagcacactcttaaaaatctccttgttgctattaggg |
220 |
Q |
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| T |
50548822 |
gagtaaaactataaggagaataatgttcaaataactgttaaattaaaacaatattttcttagttagcacacacttaaaaatctccttgttgctattaggg |
50548921 |
T |
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| Q |
221 |
taagtggaaataaattctctcagctttattgctctcatctgctatca |
267 |
Q |
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| T |
50548922 |
taagtggaaataaattctctcaactttattgctctcatctgctatca |
50548968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 323 - 537
Target Start/End: Original strand, 50549033 - 50549247
Alignment:
| Q |
323 |
attgtgagattgataacacgcatgagaaagaaaacttgggagaattggtaaatcgtatcaagacacatgaaatatgcctttcatactttaccaaaagtaa |
422 |
Q |
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| T |
50549033 |
attgtgagattgataacacgcatgagaaagaaaacttgggagaattggtaaatcgtatcaagacacatgaaatatgcctttcatgctttaccaaaagtaa |
50549132 |
T |
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| Q |
423 |
aagttaattcctacggttttgttgggcatggaatttggaccgcatctaattgtttggttgctatatatcttaattaatggtacaaacacctgcctattgt |
522 |
Q |
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| T |
50549133 |
aagttaattcctacggttttgttgggcatggaatttggaccgcatctaattggttggttgctatatatcttaattaatggtacaaacacctgcctattgt |
50549232 |
T |
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| Q |
523 |
gtcttggttcatctc |
537 |
Q |
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| T |
50549233 |
gtcttggttcatctc |
50549247 |
T |
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