View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12577_low_4 (Length: 420)

Name: NF12577_low_4
Description: NF12577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12577_low_4
NF12577_low_4
[»] chr6 (2 HSPs)
chr6 (172-381)||(17365010-17365219)
chr6 (26-148)||(17365390-17365512)
[»] scaffold0142 (3 HSPs)
scaffold0142 (324-420)||(925-1021)
scaffold0142 (324-420)||(4459-4555)
scaffold0142 (17-96)||(12426-12505)
[»] chr5 (1 HSPs)
chr5 (149-310)||(23006776-23006937)
[»] chr1 (1 HSPs)
chr1 (148-342)||(20839256-20839450)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 172 - 381
Target Start/End: Complemental strand, 17365219 - 17365010
Alignment:
Q  172 tgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagtattttttccaccacaaagaaaagct 271  Q
    ||||||||||||||||||| ||| | |||| ||| || ||||||  ||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  17365219 tgttctgcaaagaaggaaacgcattgatcaattttgtccgaaatactggctcatcaataaggttgttgaagtagtatttattccaccacaaagaaaagct 17365120  T
Q  272 tttagtgcattcgtcagaagcttgaaaagagacatgcacgaagtctgagatgtgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatc 371  Q
    ||  ||||||| ||  |||||||||||||||| | |||| ||||||| || ||||||||||||||| || |||||||||||||||||||||||||| |||    
T  17365119 ttcggtgcatttgtgggaagcttgaaaagagataggcacaaagtctgggacgtgaccaacaagagactgcatgcattgttgatattgagcctctgttatc 17365020  T
Q  372 ttgtcgaaat 381  Q
    ||||| ||||    
T  17365019 ttgtccaaat 17365010  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 17365512 - 17365390
Alignment:
Q  26 caaaatggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaatcttacccaataaaatggtaaagccatttt 125  Q
    ||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||||    
T  17365512 caaaatggaaccaaggagggtagttgggttcgaaagacaaagtgaagtctgcactaggtaatgctgggaatcttacgtagtaaaatgctaaagccatttt 17365413  T
Q  126 gtatttggctagtacattgttca 148  Q
    |||| |||||||| | |||||||    
T  17365412 gtatctggctagtgcgttgttca 17365390  T

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Target: scaffold0142 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 1021 - 925
Alignment:
Q  324 tgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatcttgtcgaaatcatcttcataaatggatttgagaatcatagctatggaag 420  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||| |  ||||||||||| ||||| ||||    
T  1021 tgaccaacaagagaatgaaggcattgttgatattgagcctctgacattttgtcgaaatcatcatcataaatcgtcttgagaatcatggctatagaag 925  T

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Target: scaffold0142; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 4555 - 4459
Alignment:
Q  324 tgaccaacaagagagtgaatgcattgttgatattgagcctctgtcatcttgtcgaaatcatcttcataaatggatttgagaatcatagctatggaag 420  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||| |  ||||||||||| ||||| ||||    
T  4555 tgaccaacaagagaatgaaggcattgttgatattgagcctctgacattttgtcgaaatcatcatcataaatcgtcttgagaatcatggctatagaag 4459  T

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Target: scaffold0142; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 12505 - 12426
Alignment:
Q  17 atttataaacaaaatggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaat 96  Q
    |||||||  ||||||| ||||||| ||| ||  | ||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12505 atttatagccaaaatgaaaccaaggaggatagcttggttcgaaagacaaagtgaagtctgcactaggcaatgctgggaat 12426  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 149 - 310
Target Start/End: Complemental strand, 23006937 - 23006776
Alignment:
Q  149 catacctttagttttcttcgatatgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagtat 248  Q
    |||||||||| ||| ||||||  || |||||||||||||||||||| | ||||  || || ||||||| |||||| || ||||||||||  | |||||||    
T  23006937 catacctttattttccttcgacttgctctgcaaagaaggaaaagcagtgatcaagttggtacgaaatgctggttcgtcgacaaggttggaaaggtagtat 23006838  T
Q  249 tttttccaccacaaagaaaagcttttagtgcattcgtcagaagcttgaaaagagacatgcac 310  Q
    ||||||| ||||||||| || ||||  |||||||| |  ||||| |||||||||||| ||||    
T  23006837 tttttcctccacaaagagaaactttctgtgcattcatttgaagcctgaaaagagacaggcac 23006776  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 342
Target Start/End: Complemental strand, 20839450 - 20839256
Alignment:
Q  148 acatacctttagttttcttcgatatgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttggtgaagtagta 247  Q
    ||||||||||| |||||||||   |  ||||||||||||||||| |||| ||||| || |   |||||| || ||| || ||||||||||  | ||| ||    
T  20839450 acatacctttatttttcttcgtcttactctgcaaagaaggaaaatcactgatcaggtttgcatgaaatgatgtttcgtcgacaaggttggaaaggtaata 20839351  T
Q  248 ttttttccaccacaaagaaaagcttttagtgcattcgtcagaagcttgaaaagagacatgcacgaagtctgagatgtgaccaacaagagagtgaa 342  Q
    ||| ||| ||||||||||||||||||| |||||||| |  ||||| | |||||||| | |||| |||||||  || |||||| ||||||| ||||    
T  20839350 tttgttctaccacaaagaaaagcttttggtgcattcatgcgaagcataaaaagagataggcacaaagtctggaatatgaccagcaagagaatgaa 20839256  T

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