View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12577_low_5 (Length: 363)

Name: NF12577_low_5
Description: NF12577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12577_low_5
NF12577_low_5
[»] chr7 (12 HSPs)
chr7 (1-346)||(35977216-35977561)
chr7 (1-346)||(35998628-35998973)
chr7 (1-346)||(35946553-35946901)
chr7 (3-347)||(35957763-35958107)
chr7 (1-254)||(35981782-35982035)
chr7 (1-254)||(36003194-36003447)
chr7 (109-255)||(35939207-35939357)
chr7 (1-152)||(35952177-35952328)
chr7 (48-255)||(32727391-32727598)
chr7 (16-191)||(36217720-36217895)
chr7 (146-278)||(35954964-35955096)
chr7 (16-236)||(36221666-36221886)
[»] chr1 (2 HSPs)
chr1 (1-255)||(18125481-18125735)
chr1 (48-255)||(18117875-18118082)
[»] chr2 (1 HSPs)
chr2 (49-241)||(26328703-26328895)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 35977216 - 35977561
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  35977216 aaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttc 35977315  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35977316 ctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaag 35977415  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcaagaccactcgatggtgcggaagatgaagtaaaaatg 300  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  35977416 tttttgtctgagacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcagagccactcgatggtgcggaagatgaagtaaaaatg 35977515  T
Q  301 gaagtggtggcagagttgatgagtttgatgattatctttctgatgt 346  Q
    ||||||||||||||||||||||  || ||||| |||||||||||||    
T  35977516 gaagtggtggcagagttgatgatattaatgatgatctttctgatgt 35977561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 35998628 - 35998973
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  35998628 aaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttc 35998727  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35998728 ctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaag 35998827  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcaagaccactcgatggtgcggaagatgaagtaaaaatg 300  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  35998828 tttttgtctgagacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcagagccactcgatggtgcggaagatgaagtaaaaatg 35998927  T
Q  301 gaagtggtggcagagttgatgagtttgatgattatctttctgatgt 346  Q
    ||||||||||||||||||||||  || ||||| |||||||||||||    
T  35998928 gaagtggtggcagagttgatgatattaatgatgatctttctgatgt 35998973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 35946553 - 35946901
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35946553 aaacaattctttggagaaagaccttccaaaatatatggaggaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataattttgcttc 35946652  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35946653 ctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaag 35946752  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcaagaccactcgatggtgcggaagatgaagtaaaaatg 300  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  35946753 tttttgtcttagacgacttactagttgcacaatatctaagttgttggtgttttctaattgagcagggccactcgatggtgcggaagatgaagtaaaaatg 35946852  T
Q  301 gaag---tggtggcagagttgatgagtttgatgattatctttctgatgt 346  Q
    ||||   |||| |||||||||||||  || |||||||||||||||||||    
T  35946853 gaagcgatggttgcagagttgatgatattaatgattatctttctgatgt 35946901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 35957763 - 35958107
Alignment:
Q  3 acaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcct 102  Q
    |||||||||||||||||||||||  |||| ||| |||  | ||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||    
T  35957763 acaatcctttggagaaagaccttttaaaacataaggaaaaacatcacccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcct 35957862  T
Q  103 ggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtt 202  Q
    |||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  35957863 ggtgcaccaacttttatcaattcgatcaattcaagccactttgcacgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtt 35957962  T
Q  203 tttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttctaattgagcaagaccactcgatggtgcggaagatgaagtaaaaatgga 302  Q
    ||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| ||||    
T  35957963 tttgtttgagacgacttactagctgcacaatatctaagttgttgatgttttctaattgagcaagaccactcgatggtactgaagacgaagttaaagtgga 35958062  T
Q  303 agtggtggcagagttgatgagtttgatgattatctttctgatgtc 347  Q
    || ||||||||||||||||| ||| ||||||||||||||||||||    
T  35958063 agaggtggcagagttgatgattttaatgattatctttctgatgtc 35958107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 35981782 - 35982035
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||    
T  35981782 aaacaatcctttggagaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttc 35981881  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    | | |   |||||||| |||||||||||||| |||| ||| |||||||||||||||||||  || ||||| ||||| | |||||||||||| |   ||||    
T  35981882 cagctgcgccaactttgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaag 35981981  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttc 254  Q
    ||| ||||| | |||| ||  ||||||| |||||||||||||||| | ||||||    
T  35981982 tttatgtcttagacgagtttgtagttgctcaatatctaagttgttaaggttttc 35982035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 36003194 - 36003447
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||    
T  36003194 aaacaatcctttggagaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttc 36003293  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    | | |   |||||||| |||||||||||||| |||| ||| |||||||||||||||||||  || ||||| ||||| | |||||||||||| |   ||||    
T  36003294 cagctgcgccaactttgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaag 36003393  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttc 254  Q
    ||| ||||| | |||| ||  ||||||| |||||||||||||||| | ||||||    
T  36003394 tttatgtcttagacgagtttgtagttgctcaatatctaagttgttaaggttttc 36003447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 35939207 - 35939357
Alignment:
Q  109 ccaacttttatcaaatctttcaattcaagccactttgcacgatcatc----attccatacgtcatctaacacgactaaaaacttttgaccataaagtttt 204  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||    |||||||| |||||||||||||| |||||||||||||||| |||||||     
T  35939207 ccaacttttatcaaatctttcaactcaatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagttta 35939306  T
Q  205 tgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttct 255  Q
      ||||| ||||||||| || |||||||||||||||||||| |||||||||    
T  35939307 gatctcatacgacttacaagctgcacaatatctaagttgttaatgttttct 35939357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 35952177 - 35952328
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    ||||||| ||||||||||||||||| ||||| ||| |  ||| ||| |||||||||| |||||||||   |||||||||||||||||||||||||||||     
T  35952177 aaacaattctttggagaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattttgcttt 35952276  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatc 152  Q
    |||||  |||||||| || ||||| ||||||||||| |||||||||||||||    
T  35952277 ctggtgcaccaacttctagcaaatatttcaattcaatccactttgcacgatc 35952328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 32727391 - 32727598
Alignment:
Q  48 acccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcctggtagaccaacttttatcaaatctttcaattcaagccactttgca 147  Q
    ||||||||| ||||||| || ||| |||||||| ||||| || ||||||||||||| |  ||| ||||||||||||||| |||| |||| ||| ||||||    
T  32727391 acccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgacttttatcaaatctatcaactcaatccattttgca 32727490  T
Q  148 cgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtttttgtctcaaacgacttactagttgcacaatatctaagttgttga 247  Q
    ||||||||||||||||  || ||||  || |  |||||||| ||||||  |||||| |||||  ||||||||  ||| ||| ||||||| ||||||||||    
T  32727491 cgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgttga 32727590  T
Q  248 tgttttct 255  Q
    ||||||||    
T  32727591 tgttttct 32727598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 36217895 - 36217720
Alignment:
Q  16 gaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcctggtagaccaactt 115  Q
    |||||||||||||||| ||| | |||| ||  ||||||||| ||||||| || ||| |||||||| ||||| |||||||| ||||||  |  ||||||||    
T  36217895 gaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactt 36217796  T
Q  116 ttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttg 191  Q
    | |||||||||| ||| |||| ||| ||||||||||||||||||||||| ||||||| |||||  | |||||||||    
T  36217795 tgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttg 36217720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 35954964 - 35955096
Alignment:
Q  146 cacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtttttgtctcaaacgacttactagttgcacaatatctaagttgtt 245  Q
    |||||| |||||||||||| ||||||||||||| |||||| ||||||||| ||||  ||||||| | ||||| |||| ||||||  |||||||| || ||    
T  35954964 cacgattatcattccatacatcatctaacacgagtaaaaagttttgaccagaaaggatttgtcttagacgacatactggttgcaggatatctaaattctt 35955063  T
Q  246 gatgttttctaattgagcaagaccactcgatgg 278  Q
    ||||||||||   |||||||||||||| |||||    
T  35955064 gatgttttcttggtgagcaagaccacttgatgg 35955096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 36221886 - 36221666
Alignment:
Q  16 gaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcctggtagaccaactt 115  Q
    |||||||||||||||| ||| | |||| ||  || |||||| |||||||||| |||||||| ||| ||||| || | ||| ||| ||  |  ||||||||    
T  36221886 gaaagaccttccaaaatatacgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaactt 36221787  T
Q  116 ttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtttttgtctcaaacg 215  Q
    | ||||||| |  ||| |||| ||| |||||||| |||||||||||||  |||||||  | ||  | ||||||||||||| ||||||| ||||| | |||    
T  36221786 tgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagacg 36221687  T
Q  216 acttactagttgcacaatatc 236  Q
    | ||  ||||||| |||||||    
T  36221686 aatttgtagttgctcaatatc 36221666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 18125481 - 18125735
Alignment:
Q  1 aaacaatcctttggagaaagaccttccaaaagatatggaggagcatcacccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttc 100  Q
    |||||||||||   ||||||||||| ||||| |||||  ||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18125481 aaacaatccttcaaagaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttc 18125580  T
Q  101 ctggtagaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaag 200  Q
    ||  |   ||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||   ||||    
T  18125581 ctcttgtgccaacttttatcaaatctttcaactcgatccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttgacttgaaag 18125680  T
Q  201 tttttgtctcaaacgacttactagttgcacaatatctaagttgttgatgttttct 255  Q
    | ||||| ||| | ||||||||||||||||||||||||||||| |||||||||||    
T  18125681 tgtttgtttcagaagacttactagttgcacaatatctaagttgatgatgttttct 18125735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 18117875 - 18118082
Alignment:
Q  48 acccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcctggtagaccaacttttatcaaatctttcaattcaagccactttgca 147  Q
    |||||||||||| ||||||| ||| || ||||||||| |||| | ||||||||||  |   |||||||| |||||||||||||| || | ||| ||| ||    
T  18117875 acccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccattttaca 18117974  T
Q  148 cgatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtttttgtctcaaacgacttactagttgcacaatatctaagttgttga 247  Q
    | ||||||||||||||  ||||||||||| | ||||||| ||| ||||||||||||  |||||| |||||||  ||| ||| ||||||| || | ||| |    
T  18117975 caatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggttta 18118074  T
Q  248 tgttttct 255  Q
    ||||||||    
T  18118075 tgttttct 18118082  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 26328895 - 26328703
Alignment:
Q  49 cccatcatcgaagcaattgcgttactacgtgttgtcaccataattttgcttcctggtagaccaacttttatcaaatctttcaattcaagccactttgcac 148  Q
    |||||||||||||||||   |||||||||||||||||| |  ||||||||| ||  |  |||||||||||||| ||||||||| |||| ||| |||| ||    
T  26328895 cccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaac 26328796  T
Q  149 gatcatcattccatacgtcatctaacacgactaaaaacttttgaccataaagtttttgtctcaaacgacttactagttgcacaatatctaagt 241  Q
    | | ||||| |||||  |||||||| |||| || |||||||| |||  |||| || ||||| | |||||| |||| |||| ||||||| ||||    
T  26328795 ggttatcatcccatatatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaagt 26328703  T

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