View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_high_10 (Length: 358)

Name: NF12578_high_10
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_high_10
NF12578_high_10
[»] scaffold0242 (4 HSPs)
scaffold0242 (90-342)||(14334-14586)
scaffold0242 (90-342)||(23169-23421)
scaffold0242 (23-88)||(13692-13757)
scaffold0242 (23-88)||(22527-22592)
[»] chr7 (8 HSPs)
chr7 (18-88)||(29476297-29476367)
chr7 (85-218)||(29480096-29480229)
chr7 (140-224)||(29477012-29477096)
chr7 (278-342)||(29477174-29477235)
chr7 (139-218)||(29446321-29446400)
chr7 (46-88)||(14076721-14076763)
chr7 (46-88)||(14386749-14386791)
chr7 (271-331)||(29480290-29480347)
[»] chr3 (1 HSPs)
chr3 (49-88)||(3625777-3625816)
[»] chr6 (1 HSPs)
chr6 (46-88)||(17369707-17369749)


Alignment Details
Target: scaffold0242 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 14334 - 14586
Alignment:
Q  90 agaatcaatccattgcaggtaccgagtatataagagctttgtttaccggtcaaacgatagtacggatcgacagaaagggtgaatgatgggttttgaatta 189  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14334 agaatcaaaccattgcaggtaccgattatataagagctttgtctaccggtcaaacgatagtacggatcgacagaaagggtgaatgatgggttttgaatta 14433  T
Q  190 aacggtttaacgagtaaggaacgacactgttaccccgacccaatttaccgaagaccatggtggttgttgggacgtgcagaatgactagtgtgaagagtgg 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14434 aacggtttaacgagtaaggaacgacactgttaccccgacccactttaccgtagaccatggtggttgttgggacgtgcagaatgactagtgtgaagagtgg 14533  T
Q  290 atttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcag 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14534 atttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcag 14586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 23169 - 23421
Alignment:
Q  90 agaatcaatccattgcaggtaccgagtatataagagctttgtttaccggtcaaacgatagtacggatcgacagaaagggtgaatgatgggttttgaatta 189  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23169 agaatcaaaccattgcaggtaccgattatataagagctttgtctaccggtcaaacgatagtacggatcgacagaaagggtgaatgatgggttttgaatta 23268  T
Q  190 aacggtttaacgagtaaggaacgacactgttaccccgacccaatttaccgaagaccatggtggttgttgggacgtgcagaatgactagtgtgaagagtgg 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23269 aacggtttaacgagtaaggaacgacactgttaccccgacccactttaccgtagaccatggtggttgttgggacgtgcagaatgactagtgtgaagagtgg 23368  T
Q  290 atttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcag 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23369 atttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcag 23421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13692 - 13757
Alignment:
Q  23 tggtcactaaagtaatcatgatttatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13692 tggtcactaaagtagtcatgatttatttgaagattttgataccttattttaagaaactgagtccaa 13757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 22527 - 22592
Alignment:
Q  23 tggtcactaaagtaatcatgatttatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22527 tggtcactaaagtagtcatgatttatttgaagattttgataccttattttaagaaactgagtccaa 22592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 29476297 - 29476367
Alignment:
Q  18 actcttggtcactaaagtaatcatgatttatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  29476297 actcttcgtcaccaaagtagtcatggtttatttgaagattttgataacttattttaagaaattgagtccaa 29476367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 29480096 - 29480229
Alignment:
Q  85 ccaacagaatcaatccattgcaggtaccgagtatataagagctttgtttaccggtcaaacgatagtacggatcgacagaaagggtgaatgatgggttttg 184  Q
    |||| ||||||||||||||||||||| | |  ||| | |||| ||||||| |  ||||| ||||||||||||| || |||||||||||  | ||||| |     
T  29480096 ccaaaagaatcaatccattgcaggtatcaaccatacaggagcattgtttatcactcaaatgatagtacggatctacggaaagggtgaacaacgggttctc 29480195  T
Q  185 aattaaacggtttaacgagtaaggaacgacactg 218  Q
    |||||||| ||| |||||||||||||||||||||    
T  29480196 aattaaactgttcaacgagtaaggaacgacactg 29480229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 29477012 - 29477096
Alignment:
Q  140 caaacgatagtacggatcgacagaaagggtgaatgatgggttttgaattaaacggtttaacgagtaaggaacgacactgttaccc 224  Q
    |||| ||| ||| |||||||| |||||||||||  | |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  29477012 caaatgatggtaaggatcgaccgaaagggtgaacaacgggttttgaattaaacagtttaacgagtaaggaacgacactgtaaccc 29477096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 29477174 - 29477235
Alignment:
Q  278 tgtgaagagtggatttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcag 342  Q
    ||||||||||||||||| |||||| |||   |||||||||||||||||||||||  |||||||||    
T  29477174 tgtgaagagtggatttcttgttgaagat---cgattgaggtgtaatttcacaaagctgggatcag 29477235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 29446321 - 29446400
Alignment:
Q  139 tcaaacgatagtacggatcgacagaaagggtgaatgatgggttttgaattaaacggtttaacgagtaaggaacgacactg 218  Q
    ||||| ||||||| ||||| || ||||| ||||| ||||  || ||||||||||| || ||||||||||||| |||||||    
T  29446321 tcaaatgatagtaaggatccacggaaagagtgaaagatgaattctgaattaaacgattaaacgagtaaggaatgacactg 29446400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 14076763 - 14076721
Alignment:
Q  46 tatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||||||||| ||||| || |||||||||||||||||||||    
T  14076763 tatttgaagattctgataactaattttaagaaattgagtccaa 14076721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 14386791 - 14386749
Alignment:
Q  46 tatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||||||||| ||||| || |||||||||||||||||||||    
T  14386791 tatttgaagattctgataactaattttaagaaattgagtccaa 14386749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 29480290 - 29480347
Alignment:
Q  271 tgactagtgtgaagagtggatttcgtgttgacgatgatcgattgaggtgtaatttcacaaa 331  Q
    |||||||||||||||| ||||||||||||   || ||| |||||||||||||||| |||||    
T  29480290 tgactagtgtgaagaggggatttcgtgtt---gaggattgattgaggtgtaattttacaaa 29480347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 3625816 - 3625777
Alignment:
Q  49 ttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaa 3625777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 17369749 - 17369707
Alignment:
Q  46 tatttgaagattttgataccttattttaagaaattgagtccaa 88  Q
    |||||||||||| ||||| || |||||||||||||||||||||    
T  17369749 tatttgaagattctgataactaattttaagaaattgagtccaa 17369707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University