View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_high_17 (Length: 327)
Name: NF12578_high_17
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 38974080 - 38974395
Alignment:
| Q |
2 |
tgtggatctactttcacaacaagtgatgctaaggttaaacttatcatgacatataaaatgtggttaatattgtgggatcaaggaacgattgaaagttgag |
101 |
Q |
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| T |
38974080 |
tgtggatctactttcacaacaagtgatgctaaggttaaacttgtcatgacatataaaatgtggttagtatcgtgggatcaaggaacgattgaaagttgag |
38974179 |
T |
|
| Q |
102 |
acaannnnnnnagtagtatacaaggatctccgtacatagtttgtgaaattttgagtcgattatttttgtcataaaccnnnnnnncttagcctatttagct |
201 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
38974180 |
acaatttttttagtagtatacaaggatctccgtacatactttgtgaaattttgagtcaattatttttgtcataaaccaaaaaaacttggcctatttagct |
38974279 |
T |
|
| Q |
202 |
cgattccaattttaggccattatattttattgtaaca----aaataatccatgccgtagtgtggcatatcaaaattcaaaaggaagattaattatataaa |
297 |
Q |
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||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38974280 |
cgattccaattttgggccattatattttattgcaacaaaataaataatccatgccgtagtgtggcatatcaaaattcaaaaggaagattaattatataaa |
38974379 |
T |
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| Q |
298 |
aacaaaaggaaattac |
313 |
Q |
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|||||||||||||||| |
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| T |
38974380 |
aacaaaaggaaattac |
38974395 |
T |
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