View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_high_18 (Length: 315)
Name: NF12578_high_18
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 36716760 - 36717049
Alignment:
| Q |
18 |
cataactgcttattttgttaacttgttatgtgatgataattctctgtttgttgagtttaatttgaatggtatataaattaagtcatcgttgtcaatgttc |
117 |
Q |
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| T |
36716760 |
cataactgcttattttgttaacttgttatgtgatgataattctctgtttgttgagtttaatttgaattgtatataaattaagtcatcgttgtcaaagttc |
36716859 |
T |
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| Q |
118 |
tgatgaattttctgtatgtttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggag |
217 |
Q |
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| T |
36716860 |
tgatgaattttctgtatgtttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggag |
36716959 |
T |
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| Q |
218 |
agacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
307 |
Q |
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| T |
36716960 |
agacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 136 - 307
Target Start/End: Original strand, 1482090 - 1482261
Alignment:
| Q |
136 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
235 |
Q |
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| T |
1482090 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggagagactgggaactgaggag |
1482189 |
T |
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| Q |
236 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
307 |
Q |
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| T |
1482190 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
1482261 |
T |
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