View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_high_29 (Length: 219)

Name: NF12578_high_29

Description: NF12578

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12578_high_29

[»] chr2 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 187; E-Value: 1e-101

Query Start/End: Original strand, 15 - 201

Target Start/End: Complemental strand, 40993290 - 40993104

Alignment:

Q	15	agcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaatagg	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40993290	agcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaatagg	40993191	T

Q	115	tttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagttcc	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40993190	tttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagttcc	40993104	T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 27 - 112

Target Start/End: Complemental strand, 29058760 - 29058675

Alignment:

Q	27	aatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaata	112	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	29058760	aatgaagtggaattcaacattagggtttataggaacatctgagaacttgatgttgttggattcagctccaatgtattctctgaata	29058675	T

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