View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_high_6 (Length: 415)
Name: NF12578_high_6
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 212 - 399
Target Start/End: Complemental strand, 34356914 - 34356727
Alignment:
| Q |
212 |
acctgtgtgctcagttacttgtttctaacctagtgagctggtaaaagattgaggacagaatcagtcaacaatgagatctcttcaagatcaatgaaaaaag |
311 |
Q |
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| T |
34356914 |
acctgtgtgctcagttacttgtttctaacctagtgagctggtaaaagattgaggacagaatcagtcaacaatgagatctcttcaagatcaatgaaaaaag |
34356815 |
T |
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| Q |
312 |
tacttatannnnnnnggctacaaaaaagtacttatattattttctttgaaaatatcaacccacatgcacctatagttgatatcacttg |
399 |
Q |
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| T |
34356814 |
tacttatatttttttggctacaaaaaagtacttatattattttctttgaaaatatcaacccaaatgcacctatagttgatatcacttg |
34356727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 34357115 - 34356967
Alignment:
| Q |
14 |
agatgaagaaaaggtaaaagaatatgaatgcatatatattt--ggttagacttagagagaatatatattgttttaaagatgtacacatta-caatatatg |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34357115 |
agatgaagaaaaagtaaaagaatatgaatgcatatatatatatggttagacttagagagaatatatattgttttaaagatgtacacattaacaatatatg |
34357016 |
T |
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| Q |
111 |
aaattgaaattttccaaagcttgacttagtctgactgaaaataactgaa |
159 |
Q |
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| T |
34357015 |
aaattgaaattttccaaagcttgacttagtctgactgaaaataactgaa |
34356967 |
T |
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