View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12578_high_8 (Length: 381)
Name: NF12578_high_8
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 3652922 - 3653274
Alignment:
| Q |
13 |
gagatgaaagtatcaaaagggttcctacaaatataaactatcttgcaattggaacctttgattgaattggacaatgagtcaaaaggaatatgtgtaccaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652922 |
gagatgaaagtatcaaaagggttcctacaaatataaactattttgcaattggaacctttgattgaattggacaatgagtcaaaaggaatatgtgtaccaa |
3653021 |
T |
|
| Q |
113 |
aaagtctaggctcatgaattttagacaaatcaggaattgtgtcatgcttaccataaactgtatactcaatgaaaggaacaagatcatgtggattgaaact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653022 |
aaagtctaggctcatgaattttagacaaatcaggaattgtgtcatgcttaccataaactgtatactcaatgaaaggaacaagatcatgtggattgaaact |
3653121 |
T |
|
| Q |
213 |
aagcaaaggatggtttttggatgaaatgaaatggttttggcgattcataatggcataggtaagagcttttaaccaagttgtgcctgattttggtacggtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653122 |
aagcaaaggatggtttttggatgaaatgaaatggttttggcgattcataatggcataggtaagagcttttaaccaagttgtgcctgattttggtacggtt |
3653221 |
T |
|
| Q |
313 |
gcaacaaaaacatcactttctttagcttggaaatgcttttggaaagtggttat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653222 |
gcaacaaaaacatcactttctttagcttggaaatgcttttggaaagtggttat |
3653274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 358
Target Start/End: Original strand, 1627011 - 1627119
Alignment:
| Q |
250 |
tggcgattcataatggcataggtaagagcttttaaccaagttgtgcctgattttggtacggttgcaacaaaaacatcactttctttagcttggaaatgct |
349 |
Q |
| |
|
|||||||| ||||||||| |||| || ||||| ||||| ||||| ||||||||||| || || ||||||| |||||||| || |||||||| || || | |
|
|
| T |
1627011 |
tggcgattaataatggcaaaggttagggctttcaaccatgttgttcctgattttggaacagtggcaacaaccacatcactatccttagcttgaaagtggt |
1627110 |
T |
|
| Q |
350 |
tttggaaag |
358 |
Q |
| |
|
|||| |||| |
|
|
| T |
1627111 |
tttgaaaag |
1627119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 1618446 - 1618542
Alignment:
| Q |
250 |
tggcgattcataatggcataggtaagagcttttaaccaagttgtgcctgattttggtacggttgcaacaaaaacatcactttctttagcttggaaat |
346 |
Q |
| |
|
|||||||| ||||| ||| |||| || ||||| ||||| ||||| ||||||||||| | | |||| || ||||||||| ||||||||||| |||| |
|
|
| T |
1618446 |
tggcgattaataattgcaaaggttagggctttcaaccatgttgttcctgattttggcatagaggcaataacaacatcactatctttagcttgaaaat |
1618542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 15169137 - 15169212
Alignment:
| Q |
283 |
aaccaagttgtgcctgattttggtacggttgcaacaaaaacatcactttctttagcttggaaatgcttttggaaag |
358 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||| || |||||| ||||| ||||| ||||| ||||| |||| |
|
|
| T |
15169137 |
aaccaagtggtgcctgattttggtaagcttgcaacaacaatatcactatctttggcttgaaaatgattttgaaaag |
15169212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 4506862 - 4506943
Alignment:
| Q |
277 |
gcttttaaccaagttgtgcctgattttggtacggttgcaacaaaaacatcactttctttagcttggaaatgcttttggaaag |
358 |
Q |
| |
|
||||| |||||||||||||| |||||||||| | | ||||||| || |||| | ||||| ||||| ||||| ||||| |||| |
|
|
| T |
4506862 |
gctttcaaccaagttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaag |
4506943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University