View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12578_low_1 (Length: 701)

Name: NF12578_low_1
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12578_low_1
NF12578_low_1
[»] chr3 (15 HSPs)
chr3 (17-686)||(5374743-5375415)
chr3 (34-629)||(5356388-5356985)
chr3 (31-626)||(5369064-5369666)
chr3 (402-686)||(5362973-5363260)
chr3 (402-686)||(5368189-5368476)
chr3 (27-362)||(5363276-5363603)
chr3 (27-135)||(7179028-7179139)
chr3 (241-306)||(7178902-7178967)
chr3 (239-306)||(7127014-7127081)
chr3 (74-135)||(8399989-8400055)
chr3 (322-359)||(5368495-5368532)
chr3 (222-307)||(7119802-7119887)
chr3 (95-136)||(7119982-7120023)
chr3 (411-472)||(7126688-7126749)
chr3 (403-479)||(7178718-7178794)
[»] chr6 (5 HSPs)
chr6 (411-478)||(33839541-33839608)
chr6 (93-136)||(33839161-33839204)
chr6 (85-135)||(7174411-7174461)
chr6 (93-134)||(33843077-33843118)
chr6 (411-471)||(33843461-33843521)
[»] chr8 (2 HSPs)
chr8 (217-306)||(30054329-30054420)
chr8 (407-496)||(30054498-30054587)
[»] chr7 (1 HSPs)
chr7 (411-476)||(44500709-44500774)
[»] chr4 (2 HSPs)
chr4 (411-472)||(36590659-36590720)
chr4 (88-136)||(36590356-36590404)
[»] chr5 (1 HSPs)
chr5 (95-136)||(28092141-28092182)
[»] scaffold0210 (1 HSPs)
scaffold0210 (411-471)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 17 - 686
Target Start/End: Complemental strand, 5375415 - 5374743
Alignment:
Q  17 gaaaccaagttctatttaaaaagttgaaagcaaatttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375415 gaaaccaagttctatttaaaaagttgaaagcaaatttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaatt 5375316  T
Q  117 ccactactccatcaggtatgaatttagctttaattaactgaattccggcaccttctttcttgaacttgcgacatctcagtatcatgtataatccaggtgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375315 ccactactccatcaggtatgaatttagctttaattaactgaattctggcaccttctttcttgaacttgcgacatctcagtatcatgtataatccaggtgt 5375216  T
Q  217 aagcggtttcatttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctaacgaaggaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5375215 aagcggtttcatttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctatcgaaggaaa 5375116  T
Q  317 gaaggatagttatatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaatataaatatatcggcctcaaaacctga 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375115 gaaggatagttatatattttagacaaaatttatatataaagaaacgaaaaatacaagcaattgaagaacaaaatataaatatatcggcctcaaaacctga 5375016  T
Q  417 agagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgacccatctgatgtcttcta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375015 agagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgacccatctgatgtcttcta 5374916  T
Q  517 catcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaagacacggagcagataa 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||| |||||||||||||    
T  5374915 catcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaagatacggagcagataa 5374816  T
Q  617 cttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgat 686  Q
    | ||| ||||| |  |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374815 catgattttgcttttgtagttgttataaagatagtatccatatatagttaagttgacaagcgttgtatttgat 5374743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 34 - 629
Target Start/End: Complemental strand, 5356985 - 5356388
Alignment:
Q  34 aaaaagttgaaagcaaatttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactccatcaggt 133  Q
    ||||| || |||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5356985 aaaaaattcaaagcacatttcaccttaatcatcattatctataatgttaatctttgctaacggtgagttttgaagcaaaaattccactactccataaggt 5356886  T
Q  134 atgaatttagctttaattaactgaattccggcaccttctttcttgaacttgcgacatctcagtatcatgtataatccaggtgtaagcggtttcatttcta 233  Q
    ||||||||| ||||  | ||  |||||||||||| |  |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||    
T  5356885 atgaatttatctttcttcaaacgaattccggcacgtgttttcttgaacttgcgaaaactcagtatcttgtataatccaggtgtaagcggtttcatttcta 5356786  T
Q  234 cttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctaacgaaggaaagaaggatagttatatat 333  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||  ||||||||||||| |  |||||||||  ||| |||| | |||  ||   | ||    
T  5356785 cttgtagtgactccaagttacacaaggaagttagtttaaccttgaaaaaatcaggaacaatg--gagaacctattgaatgaaatatggacggtccgacat 5356688  T
Q  334 tttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaac----aaaatataaatatatcggcctcaaaacctgaagagtattagaag 429  Q
    |||||| |||||||| | |||||  ||||  |||| ||||||| | ||||||     | ||||||||||| | |||||||||||||||||||||||||||    
T  5356687 tttagaaaaaatttagaaataaa-taacg--aaatgcaagcaactaaagaaccgcacatatataaatatagcagcctcaaaacctgaagagtattagaag 5356591  T
Q  430 agactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgacccatc---tgatgtcttctacatcaatgta 526  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||| ||||  |||||||||||||| |||  | |    |||||||||| ||| ||  ||    
T  5356590 agactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaatcctctttgacgaagccgacgatgtcttctgcattaacata 5356491  T
Q  527 taagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaagacacggagcagataacttgagtttg 626  Q
    |||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||| |||||||| ||||| ||||| | |||||| |||||||    
T  5356490 taagtgtgtaatagaacaaggatggctcacacttagtattagatttggagtaccagtaaaagaaaagttagtaagactcggagtaaataactcgagtttg 5356391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 626
Target Start/End: Complemental strand, 5369666 - 5369064
Alignment:
Q  31 tttaaaaagttgaaagcaaatttcacctta---atcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactcca 127  Q
    |||||||||| ||||||| | |||||||||   ||||||||||| ||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  5369666 tttaaaaagtagaaagcacaattcaccttattaatcatcattatttatgaagttaacctttgctaacggtgaggtttgaagcaaaaattccactactcca 5369567  T
Q  128 tcaggtatgaatttagctttaattaactgaattccggcaccttctttcttgaacttgcgacatctcagtatcatgtataatccaggtgtaagcggtttca 227  Q
     ||||||||| |||| ||||  | || |||||||  | |||   || |||| ||||||||   |||||||  | ||||||||||||||||||| ||||||    
T  5369566 acaggtatgagtttatctttcgtcaaatgaattctagaacccgtttccttgtacttgcgatgactcagtaatacgtataatccaggtgtaagcagtttca 5369467  T
Q  228 tttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctaacgaaggaaagaaggatagtt 327  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||| |||| ||||||||||||||| |||||||||||  ||| |||||| ||| | |     
T  5369466 tttctacttgtagtgactccaagttacataaggaagtgagtttaacattgaacaaatcaggaacaaaagagagaacctattgaatgaaagatggacaatc 5369367  T
Q  328 atatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaa--tataaatatatcggcctcaaaacctgaagagtatta 425  Q
    ||| |||||||||  |||||| |||| || |||| |||||| |||||||  | ||||| | |  |||||||||| |||||||||||||||||||||||||    
T  5369366 atacattttagac--aatttagatat-aataaac-gaaaatgcaagcaacagcagaaccacacgtataaatataacggcctcaaaacctgaagagtatta 5369271  T
Q  426 gaagagactgttaatgatttgatattagcaagctctagcagccagctg---aatagggttgcagaatcctcttcgacccatc---tgatgtcttctacat 519  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||   | ||||  |||||||||||||| |||  | |   ||||||||||| |||    
T  5369270 gaagagactgtcaatgatttgatattagcaagctcttgcagccagctgatcagtaggactgcagaatcctctttgacgaagccgatgatgtcttctgcat 5369171  T
Q  520 caatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaagacacggagcagataactt 619  Q
     |||| |||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||||||||||||  ||||||| | ||||| ||||||||     
T  5369170 gaatgcataagtgtgtaatagaacaaggatggctcacacataattttagatctggagtaccagtaaaagcaaacatagaaagtctcggagtagataactc 5369071  T
Q  620 gagtttg 626  Q
    |||||||    
T  5369070 gagtttg 5369064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 402 - 686
Target Start/End: Complemental strand, 5363260 - 5362973
Alignment:
Q  402 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5363260 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaatcctcttcgaccc 5363161  T
Q  502 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 601  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5363160 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5363061  T
Q  602 acacggagcagataacttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgat 686  Q
    | |||||||||||||| ||| ||||| |  |||   | |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  5363060 atacggagcagataacatgattttgcttttgtacttgttataaagataatatccatatatagttaagttgacaagcgttgtacttgat 5362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 402 - 686
Target Start/End: Complemental strand, 5368476 - 5368189
Alignment:
Q  402 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5368476 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaatcctcttcgaccc 5368377  T
Q  502 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 601  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5368376 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5368277  T
Q  602 acacggagcagataacttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgat 686  Q
    | |||||||||||||| ||| ||||| |  |||   | |||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  5368276 atacggagcagataacatgattttgcttttgtacttgttataaagataatatccatatatagttaagttgacaagcgttgtacttgat 5368189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 27 - 362
Target Start/End: Complemental strand, 5363603 - 5363276
Alignment:
Q  27 tctatttaaaaagttgaaagcaaatttcaccttaatcatcattatctatgatggtaatctttgctaacggtgagttttgaagcaaaaattccactactcc 126  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | | ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5363603 tctatttaaaaagttgaaagcacatttcaccttaatcatcattattttttatgttaatctttgctaaaggtgagttttgaagcaaaaattccactactcc 5363504  T
Q  127 atcaggtatgaatttagctttaattaactgaattccggcaccttctttcttgaacttgcgacatctcagtatcatgtataatccaggtgtaagcggtttc 226  Q
    | ||||||||||||||| |||  | || |||||||| | ||||||||| |||||| |  |      |||| ||| || |||||||| |||||| ||||||    
T  5363503 agcaggtatgaatttagttttcttcaaatgaattccagaaccttctttattgaacatatg------cagtttcaagtctaatccagttgtaagaggtttc 5363410  T
Q  227 atttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctaacgaaggaaagaagg----- 321  Q
    ||||||||||||||  |||||| |||||| |||||| |||||||||||||         |||||||||||||||||||||  |||||| | | ||         
T  5363409 atttctacttgtagcaactccaagttacataaggaagtgagtttaacctt---------aggaacaaaggagagaacctattgaaggagaaatggatagt 5363319  T
Q  322 --atagttatatattttagacaaaatttatatataaagaaacg 362  Q
      ||||||||| |||||||||||||||||||||||||||||||    
T  5363318 taatagttatacattttagacaaaatttatatataaagaaacg 5363276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 7179139 - 7179028
Alignment:
Q  27 tctatttaaaaagttgaaagcaaatttcaccttaatcatcattatct---atgatggtaatctttgctaacggtgagttttgaagcaaaaattccactac 123  Q
    |||||||||||||||||||| |||||||||||||||||| | |  ||   |||||| ||| ||||||| | |||||||||||||||||||| |||| |||    
T  7179139 tctatttaaaaagttgaaagtaaatttcaccttaatcattaattccttatatgatgttaacctttgctgatggtgagttttgaagcaaaaaatccagtac 7179040  T
Q  124 tccatcaggtat 135  Q
    ||||||| ||||    
T  7179039 tccatcaagtat 7179028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 7178967 - 7178902
Alignment:
Q  241 tgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaaccta 306  Q
    |||||||| ||||||||||| | |||||||||||||||  |||| |||||| ||||||||||||||    
T  7178967 tgactccacgttacacaaggtagtgagtttaaccttgaataaattaggaactaaggagagaaccta 7178902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 7127081 - 7127014
Alignment:
Q  239 agtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaaccta 306  Q
    ||||||| || ||||| |||||||| |||||||||||| | |||| ||||||| ||||||||||||||    
T  7127081 agtgacttcaagttacgcaaggaatggagtttaaccttcaacaaaccaggaactaaggagagaaccta 7127014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 8399989 - 8400055
Alignment:
Q  74 atgatggtaatctttgctaacggtgagttttgaagcaaaaat-----tccactactccatcaggtat 135  Q
    |||||| ||| ||||||| | |||||||||||||||||||||     ||||||||||||||||||||    
T  8399989 atgatgttaacctttgctgatggtgagttttgaagcaaaaattaaagtccactactccatcaggtat 8400055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 5368532 - 5368495
Alignment:
Q  322 atagttatatattttagacaaaatttatatataaagaa 359  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  5368532 atagttatacattttagaccaaatttatatataaagaa 5368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 7119887 - 7119802
Alignment:
Q  222 gtttcatttctacttgtagtgactccaggttacacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaacctaa 307  Q
    ||||||||| ||||  || ||||| || |||||||||||||   || |||||||| |  ||||||||||| |||||||||||||||    
T  7119887 gtttcatttttactcttaatgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaa 7119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 7120023 - 7119982
Alignment:
Q  95 ggtgagttttgaagcaaaaattccactactccatcaggtatg 136  Q
    |||||||||||||||||||| || |||| |||||||||||||    
T  7120023 ggtgagttttgaagcaaaaagtcgactattccatcaggtatg 7119982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 7126749 - 7126688
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 472  Q
    |||||||||||||| |||||||| || |||| |||| ||| |||||||||| ||| ||||||    
T  7126749 acctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagct 7126688  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 7178794 - 7178718
Alignment:
Q  403 gcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagg 479  Q
    |||| ||||||||||||||| || ||||||  || |||||| |||||||||||| ||| || |||||| ||| ||||    
T  7178794 gccttaaaacctgaagagtactataagagatcgtcaatgatgtgatattagcaaactcgagaagccagttgagtagg 7178718  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 33839541 - 33839608
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag 478  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  33839541 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag 33839608  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 33839161 - 33839204
Alignment:
Q  93 acggtgagttttgaagcaaaaattccactactccatcaggtatg 136  Q
    ||||||||||||||||||| || ||||||| |||||||||||||    
T  33839161 acggtgagttttgaagcaagaagtccactattccatcaggtatg 33839204  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 7174411 - 7174461
Alignment:
Q  85 ctttgctaacggtgagttttgaagcaaaaattccactactccatcaggtat 135  Q
    ||||||| |||||||||||||||| |||||||||| || ||||||| ||||    
T  7174411 ctttgctgacggtgagttttgaaggaaaaattccaatattccatcatgtat 7174461  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 33843077 - 33843118
Alignment:
Q  93 acggtgagttttgaagcaaaaattccactactccatcaggta 134  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  33843077 acggtgagttttgaagcaagaagtccactattccatcaggta 33843118  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 33843461 - 33843521
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 471  Q
    ||||||||||| || |||| ||||||||||||||  |  |||||||| |||||||||||||    
T  33843461 acctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagc 33843521  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 30054329 - 30054420
Alignment:
Q  217 aagcggtttcatttctacttgtagtgactccaggtt---acacaaggaattgagtttaaccttgatcaaatcaggaacaaaggagagaaccta 306  Q
    ||||||||||||||| |||||||||||||||| |||   ||||||||||  ||||||||||||||  |||||||||| ||| |||||||||||    
T  30054329 aagcggtttcatttcaacttgtagtgactccaagttacaacacaaggaagagagtttaaccttgaataaatcaggaagaaa-gagagaaccta 30054420  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 30054498 - 30054587
Alignment:
Q  407 caaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttc 496  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||| || || ||| |||||| ||| ||||  |||||| || |||||    
T  30054498 caaaacctgaagagtatcagaagagacagtcaatgatttgatattagaaaactgtagtagccagttgagtaggactgcagattcgtcttc 30054587  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 44500709 - 44500774
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaat 476  Q
    |||||||||||| | | |||||| || |||||||| || |||||||||||||| ||||||||||||    
T  44500709 acctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat 44500774  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 36590659 - 36590720
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 472  Q
    |||||||||||| | | |||||| || |||||||||||||||||||| |||| |||||||||    
T  36590659 acctgaagagtactcgcagagaccgtcaatgatttgatattagcaagttctaacagccagct 36590720  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 36590356 - 36590404
Alignment:
Q  88 tgctaacggtgagttttgaagcaaaaattccactactccatcaggtatg 136  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||||||    
T  36590356 tgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatg 36590404  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 28092182 - 28092141
Alignment:
Q  95 ggtgagttttgaagcaaaaattccactactccatcaggtatg 136  Q
    ||||||||||||| |||||| ||||||| |||||||||||||    
T  28092182 ggtgagttttgaatcaaaaagtccactattccatcaggtatg 28092141  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 15608 - 15668
Alignment:
Q  411 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 471  Q
    |||||||||||| | |||| |||||| ||||||||||||||||  ||||| | ||||||||    
T  15608 acctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagc 15668  T

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