View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_10 (Length: 389)
Name: NF12578_low_10
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 32601133 - 32600764
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32601133 |
cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaat |
32601034 |
T |
|
| Q |
117 |
atgataactcacttattttcttcannnnnnnnnn-----------cattttcttcgagtaaacttaatattataactggaatagtnnnnnnnntcaatta |
205 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32601033 |
atgataactcacttattttcttcattttcttcatattttttttttcattttcttcgagtaaacttaatattataactggaatagtaaaaaaaatcaatta |
32600934 |
T |
|
| Q |
206 |
ttttcttcattttcttatattatgaccaactaactttattccatccct-agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctgga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600933 |
ttttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctgga |
32600834 |
T |
|
| Q |
305 |
cctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattac |
374 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600833 |
cctggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattac |
32600764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 374
Target Start/End: Complemental strand, 32590489 - 32590316
Alignment:
| Q |
200 |
caattattttcttcattttcttatattatgaccaactaactttattccatccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatg |
299 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
32590489 |
caattattttcttcattttcctatattatgaccaactaactttattcc-tccctaggatgacttctataatagatgtaaacgataaatgggcatcttatg |
32590391 |
T |
|
| Q |
300 |
ctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattac |
374 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| ||||||||||||| |
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| T |
32590390 |
ctggacctggaggatggaatggtaattaattaacctcactaataattttatgaatgttaagtttaagatcattac |
32590316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 32590662 - 32590551
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaat |
116 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||| |
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| T |
32590662 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaat |
32590563 |
T |
|
| Q |
117 |
atgataactcac |
128 |
Q |
| |
|
||||||| |||| |
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|
| T |
32590562 |
atgataattcac |
32590551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 24883555 - 24883595
Alignment:
| Q |
284 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
324 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24883555 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
53 |
agtgtgggaaatagttggagaacaactggagatattgaagataactggaataggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||| |||||| |
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|
| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 34578196 - 34578076
Alignment:
| Q |
254 |
agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaacctcactagtaatgttatgca |
353 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34578196 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaattaacctcactagtaatgttatgca |
34578097 |
T |
|
| Q |
354 |
tgttaaacttaagatcattac |
374 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
34578096 |
tgttaaacttaagatcattac |
34578076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 34594181 - 34594089
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaa |
109 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
34594181 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
34594089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
| Q |
20 |
aggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggt |
107 |
Q |
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|
||||||||||||||||| || || |||||||||||||||||||||||||||||||| || || ||||| |||||||| ||||| |||| |
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| T |
34578478 |
aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 34593991 - 34593907
Alignment:
| Q |
249 |
tccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatggaatggtaattaactaac |
333 |
Q |
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|
|||||||||||||||||||| |||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
34593991 |
tccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac |
34593907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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