View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_14 (Length: 358)
Name: NF12578_low_14
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 38973577 - 38973436
Alignment:
| Q |
62 |
cttatatcactctttgtgggcccttaccaatccgtcaaaccaaccccaccaactgtaagtaagtagtcgctatgcttattcttttagccaaattgtttct |
161 |
Q |
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| T |
38973577 |
cttatatcactctttgtgggcccttaccaatccgtcaaaccaaccccaccaactgtaagta----gtcgctatgcttattcttttagccaaattgtttct |
38973482 |
T |
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| Q |
162 |
tatacgataatttgctattttgtgatctttaataggttcttttgtc |
207 |
Q |
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| T |
38973481 |
tatacgataatttgctattttgtgatctttagtaggttcttttgtc |
38973436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 38965045 - 38964914
Alignment:
| Q |
222 |
gatctttagtacgttggacaaggcttaatacatatggagcttctaatggtggcctttttgctggttgtggaggagttatcaggggacaaaagggtgcttg |
321 |
Q |
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| T |
38965045 |
gatctttagtaggttggacaaggattaatacatatggagcttctaatggtggcctttttgctggctgtggaggagttatcaggggagaaaatggtgcttg |
38964946 |
T |
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| Q |
322 |
gatgtgtggtttctcaaaaggtctgtgctgct |
353 |
Q |
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| T |
38964945 |
gatgtgtggtttctcaaaaggtttgtgttgct |
38964914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 38974102 - 38974065
Alignment:
| Q |
19 |
cttgttgtgaaagtagatccacatttaaatgttgtttt |
56 |
Q |
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| T |
38974102 |
cttgttgtgaaagtagatccacagttaaatgttgtttt |
38974065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 14793413 - 14793314
Alignment:
| Q |
234 |
gttggacaaggcttaatacatatggagcttctaatggtggcctttttgctggttgtggaggagttatcaggggacaaaagggtgcttggatgtgtggttt |
333 |
Q |
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| T |
14793413 |
gttggataagacttaatactgatggagcttccaaaggcggccttaatgccggttgtggaggagttatcaggggagaaaatggtgcttggatgtgcggttt |
14793314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 50709361 - 50709467
Alignment:
| Q |
19 |
cttgttgtgaaagtagatccacatttaaatgttgttttcactgcttatatcac--tctttgtgggcccttaccaatccgtcaaaccaaccccaccaactg |
116 |
Q |
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| T |
50709361 |
cttgttttgaaagtagatccaaatttaaatgttgttttaactgcttgcatcactgtgtttgtcggatgttaccgatccgttaaaccaaccgcaccaacgg |
50709460 |
T |
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| Q |
117 |
taagtaa |
123 |
Q |
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| T |
50709461 |
tatgtaa |
50709467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 42581611 - 42581680
Alignment:
| Q |
273 |
gcctttttgctggttgtggaggagttatcaggggacaaaagggtgcttggatgtgtggtttctcaaaaggt |
343 |
Q |
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| T |
42581611 |
gccttcttgctggttgtggaggagtcatc-ggggagaaaatggtgctttgatgtgcggtttttcgaaaggt |
42581680 |
T |
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