View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_15 (Length: 345)
Name: NF12578_low_15
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 30802221 - 30801901
Alignment:
| Q |
10 |
agatgaactgctgtcaacttttcgcaggtaaagacgagataatcctatcacccatcaaaaggattgagcacatgttcgctaaagagtatcgttccattaa |
109 |
Q |
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| T |
30802221 |
agatgaactgctgtcaacttttcgcaggtaaagacgagataatcctatcacccatcaaaaggattgagcacatgttcactaaagagtatcgttccactaa |
30802122 |
T |
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| Q |
110 |
attctgctcttataaaaaataataaagggtgatctactacaaagtcgatagttttgggcttacatggagaacttgagtgtcaaatagaactctttgatgt |
209 |
Q |
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| T |
30802121 |
attctgctcttataaaaaataataaagggtgatctactacaaagtcgatagttttgggcttacatggagaacttgagtgtcaaatagaactctttgatgt |
30802022 |
T |
|
| Q |
210 |
cttataacaagattagagtagagaatcataaatgcaaggtttatgaatttaggaaaagataaatataatcattgttctagtagaataaataaatgacaac |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30802021 |
cttataacaagattagagtacagaatcataaatgcaaggtttatgaatttaggaaaagataaatataatcattgttctagtagaataaataaatgacaac |
30801922 |
T |
|
| Q |
310 |
tcttgtaatattcgagcataa |
330 |
Q |
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||||||||||||||||||||| |
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| T |
30801921 |
tcttgtaatattcgagcataa |
30801901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 30805869 - 30805759
Alignment:
| Q |
221 |
attagagtagagaatcataaatgcaaggtttatgaatttaggaaaagataaatataatcattgttctagtagaata-aataaatgacaactcttgtaata |
319 |
Q |
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| T |
30805869 |
attagagtacaaaaccataaatgcaaggttcatgagtttagaaaaataaaaataaaatcattgttctagtaaaatagaaaaaatgacacctcttgtaata |
30805770 |
T |
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| Q |
320 |
ttcgagcataa |
330 |
Q |
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||||| ||||| |
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| T |
30805769 |
ttcgaacataa |
30805759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 30792564 - 30792456
Alignment:
| Q |
47 |
gataatcctatcacccatcaaaaggattgagcaca-tgttcgctaaagagtatcgttccattaaattctgctcttataaaaaataataaagggtgatcta |
145 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||| | ||||||||||||| ||| ||||||| | |
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| T |
30792564 |
gataatcgaatcacccatcaaaaggattgagcaccctgttcgctaaatagtattgttccactgaattcttcagttataaaaaataagaaatggtgatcaa |
30792465 |
T |
|
| Q |
146 |
ctacaaagt |
154 |
Q |
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||||||||| |
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| T |
30792464 |
ctacaaagt |
30792456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 30799313 - 30799243
Alignment:
| Q |
259 |
taggaaaagataaatataatcattgttctagtagaataaataaatgacaactcttgtaatattcgagcataa |
330 |
Q |
| |
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|||||||| ||||||| || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| |
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| T |
30799313 |
taggaaaa-ataaataaaaccattgttctaatacaataaataaatgacaacacttgtaatattcgaacataa |
30799243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 30809726 - 30809626
Alignment:
| Q |
233 |
aatcataaatgcaaggtttatgaatttaggaaaagataaatataatcattgttctagtaga---ataaataaatgacaactcttgtaatattcgagcata |
329 |
Q |
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|||||||||||||| ||| | || |||| ||||| | ||||| |||||||| ||||||| | |||||||||||||||||||||| |||||||| |||| |
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| T |
30809726 |
aatcataaatgcaatgttcacgagtttatgaaaataaaaataaaatcattggtctagtacattaataaataaatgacaactcttgtgatattcgaacata |
30809627 |
T |
|
| Q |
330 |
a |
330 |
Q |
| |
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| |
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|
| T |
30809626 |
a |
30809626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 30792457 - 30792420
Alignment:
| Q |
283 |
gttctagtagaataaataaatgacaactcttgtaatat |
320 |
Q |
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||||||||| |||||||||||||||||| ||||||||| |
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| T |
30792457 |
gttctagtacaataaataaatgacaacttttgtaatat |
30792420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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