View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_17 (Length: 340)
Name: NF12578_low_17
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 19032250 - 19031998
Alignment:
| Q |
19 |
aataccaacatacataatagtgacattagaataatacttgtgttactgactcttccctgatccatgataaacttttagtgattcaactgactagcactgg |
118 |
Q |
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| T |
19032250 |
aataccaagatacataatagtgacattagaataatacttgtgttactgactcttccctgatccatgataaacttttagtgattcaactaactagcactgg |
19032151 |
T |
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| Q |
119 |
ttaattaatttttggtgctcataatagacagctgagagatggttttatatgcaagaacactgtttaaaattaataaattatattttaacnnnnnnnnnnn |
218 |
Q |
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| T |
19032150 |
ttaattaattttgggtgctcataatagacaactgagagatggttttatatgcaagaacactgtttaaaattaataaattatattttaactttttgttttt |
19032051 |
T |
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| Q |
219 |
nnctttaacaaattatttgacatttgaccgataattatttaactcttgactct |
271 |
Q |
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| T |
19032050 |
ttctttaacaaattatttgacatttgaccgataattatttaactcttgactct |
19031998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 19010364 - 19010178
Alignment:
| Q |
19 |
aataccaacatacataatagtgacattagaataatacttgtgttactgactcttccctgatccatgataaacttttagtgattcaactgactagcactgg |
118 |
Q |
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| T |
19010364 |
aataccaacatacataatagtgacattagaataatacttgtgctactgactcttccctgatccatgataaagttttagtgattaagctaactagcactgg |
19010265 |
T |
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| Q |
119 |
ttaattaatttttggtgctcataatagacagctgagagatggttttatatgcaagaacactgtttaaaattaataaattatattttaac |
207 |
Q |
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| T |
19010264 |
ttaattaattttggatgctcacaatagagaattgagagat-gttttatagacaagaacaatgttt-aaattaatatattatattttaac |
19010178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 19010132 - 19010082
Alignment:
| Q |
221 |
ctttaacaaattatttgacatttgaccgataattatttaactcttgactct |
271 |
Q |
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| T |
19010132 |
ctttaacaagttatttgaaatttgaccgataattatttgactcttgactct |
19010082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 19031969 - 19031911
Alignment:
| Q |
271 |
ttaactttaatataatacttcatctgtcttacaataagtaaatcttttattcatctcac |
329 |
Q |
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| T |
19031969 |
ttaactttaatataatacttcatccgtttcataataagtaaatcttttgttcatttcac |
19031911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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