View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12578_low_2 (Length: 586)
Name: NF12578_low_2
Description: NF12578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12578_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 2016491 - 2017006
Alignment:
| Q |
19 |
cttactttgttgatcattttgttattcaattaaccatgtgtcatgtgcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaa |
118 |
Q |
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| T |
2016491 |
cttactttgttgatcattttgttattcaattaaccatgtggcatgtgcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaa |
2016590 |
T |
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| Q |
119 |
ttaattaatcactagtttgagtttactattgtactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttcttatata |
218 |
Q |
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| T |
2016591 |
ttaattaatcactaatttgagtttactattgtactccctctggacttttttataagtgacaaatgagtcgataaaagttgatgtaattggttcttatata |
2016690 |
T |
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| Q |
219 |
gaccaaatacatcaattttattgatctattcgtctcttataaaaatgaccggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtct |
318 |
Q |
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| T |
2016691 |
gaccaaatacatcaattttattgatctattcgtctcttataaaaatgactggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtct |
2016790 |
T |
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| Q |
319 |
tggtcatgttgtggcaattgagaaagtaagcatcattcaacacatctttggttcaatgcatgcaatgcaactaagtcggattttgaattctaatttgcta |
418 |
Q |
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| T |
2016791 |
tggtcatgttgtggcaattgagaaagtaagcatcattcaacacatctttggttcaatgcatacaatgcaactaagtcggattttgaattctaatttgcta |
2016890 |
T |
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| Q |
419 |
catttcggatatgttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctatttcaaatatctcatttgttggtgcaaattaactgca |
518 |
Q |
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| T |
2016891 |
catttcggatatgttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctgtttcaaatatctcatttgttggtgcaaattaactgca |
2016990 |
T |
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| Q |
519 |
atgttaacttgtctgt |
534 |
Q |
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| T |
2016991 |
atgttaacttgtctgt |
2017006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 385
Target Start/End: Original strand, 2015061 - 2015174
Alignment:
| Q |
276 |
gtattgtctgcattctt-cattccttgtctgcgctttgtagtcttggtcat---gttgtggcaattgagaaagtaagcatcattcaacacatctttggtt |
371 |
Q |
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| T |
2015061 |
gtattgtctgcattttttcataccttgtctacacttagtagtcttggtcctcgtgttttggcaatcgagaaagtaagaatcattcagggcttctttggtt |
2015160 |
T |
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| Q |
372 |
caatgcatgcaatg |
385 |
Q |
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| T |
2015161 |
caatgcatgtaatg |
2015174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 547 - 586
Target Start/End: Complemental strand, 3086184 - 3086145
Alignment:
| Q |
547 |
agacacaaaattgacagaatgatccagtgacatcacctct |
586 |
Q |
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| T |
3086184 |
agacacaaaattgacaaaatgatccagtgacatcacctct |
3086145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 30443858 - 30443733
Alignment:
| Q |
150 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc-ttatatagaccaaatacatcaa-ttttattgatctat |
247 |
Q |
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| T |
30443858 |
tactccctccggtcctttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccat |
30443759 |
T |
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| Q |
248 |
tcgtctcttataaaaatgaccggagg |
273 |
Q |
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| T |
30443758 |
ttgtttcttataaaaaagacgggagg |
30443733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 586
Target Start/End: Original strand, 4555528 - 4555567
Alignment:
| Q |
547 |
agacacaaaattgacagaatgatccagtgacatcacctct |
586 |
Q |
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| T |
4555528 |
agacacaaaattgacaaaatgatcctgtgacatcacctct |
4555567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 3938404 - 3938333
Alignment:
| Q |
163 |
cctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttctta-tatagaccaaatacatcaa |
233 |
Q |
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| T |
3938404 |
cctttttataagagagaaatgagtcattaaaaattgatgtatttggttcataataaagaccaaatacatcaa |
3938333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 48051033 - 48050972
Alignment:
| Q |
150 |
tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc |
211 |
Q |
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| T |
48051033 |
tactccctatggtcctttttataagagacaaattggtcaactaaagttgatgtatttggttc |
48050972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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